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134  structures 1598  species 0  interactions 52547  sequences 787  architectures

Clan: HMG-box (CL0114)

Summary

HMG-box like superfamily Add an annotation

This clan includes the DNA-binding HMG-box proteins as well as the YABBY-like transcription factors.

This clan contains 8 families and the total number of domains in the clan is 52547. The clan was built by A Bateman.

Members

This clan contains the following 8 member families:

Ccdc124 CHDNT HMG_box HMG_box_2 HMG_box_5 MATalpha_HMGbox Protamine_like YABBY

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
HMG_box (PF00505) 40204 (76.5%) View
HMG_box_2 (PF09011) 5019 (9.6%) View
CHDNT (PF08073) 2414 (4.6%) View
YABBY (PF04690) 2062 (3.9%) View
Ccdc124 (PF06244) 1628 (3.1%) View
HMG_box_5 (PF14887) 807 (1.5%) View
MATalpha_HMGbox (PF04769) 265 (0.5%) View
Protamine_like (PF06382) 148 (0.3%) View
Total: 8 Total: 52547 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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