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2  structures 4159  species 0  interactions 20804  sequences 92  architectures

Clan: AsmA-like (CL0401)

Summary

AsmA-like OmpF regulator protein superfamily Add an annotation

Families in this collection are AsmA-like. Mutations in the AsmA gene restore the assembly of OmpF, a trimeric outer membrane porin from E coli and related bacteria necessary for the cytotoxic action of group-A colicins.

This clan contains 7 families and the total number of domains in the clan is 20804. The clan was built by A Bateman.

Members

This clan contains the following 7 member families:

AsmA AsmA_1 AsmA_2 DUF3971 DUF748 T2SSN TamB

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
TamB (PF04357) 5215 (25.1%) View
AsmA_2 (PF13502) 4664 (22.4%) View
AsmA (PF05170) 4456 (21.4%) View
DUF748 (PF05359) 3199 (15.4%) View
DUF3971 (PF13116) 2178 (10.5%) View
T2SSN (PF01203) 962 (4.6%) View
AsmA_1 (PF13109) 130 (0.6%) View
Total: 7 Total: 20804 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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