Sequence alignment for CL0721

PF05827

G3VSF5_SARHA/278-418EPRILFWARN------FTVTYDSES-------------------HDLTH-----LTFGTSM-LNL-TGSS-------WNS
F6X427_XENTR/252-398TPCILFWATN------VSVTVDDVQ-------------------VDLTD-----QTFTASN-LDL-TGSL-------CND
W5NEK7_LEPOC/252-400GPCILLWAKN------ITLSWERSRDQW--------------VRLDLGP-----MTFGASANVSL-SDSS-------CNQ
I3KC00_ORENI/254-403GSCILLWAKS------LSVSILRSGRW---------------EEHDLTP-----STFGEGVIPKL-DGSS-------CDK
T1KIB7_TETUR/49-194ENCVVLWMNS------IQVEWEINEKPYFETINPKTNKPVVKSDCSITEPNPTGQAVGSNLTLSF-TTGL-------KNA
E0VV03_PEDHC/218-321DKMILANITK------VIGTPTTNI-------------------------------------------------------
D6X326_TRICA/158-291NIYTLLYSSH------PLVLHQEEPS------------------EDSVS-----FTLGESRMVTV-DSPG-------KD-
U4UP41_DENPD/99-247KVTYLSYVQ--------------NPVKAIQLASDDVAEISIERLRENFE-----IPDSKIVIIDL-NDAD-------ENE
F1R9A7_DANRE/252-401STCILMWAEK------LVVSQYRSGKW---------------ERHDLTS-----QTFGKGVEPNL-SGSS-------CND
F4W9X4_ACREC/176-295DNVLLYSAQP------LILKISDKPEVQLVQSKV--SGMSSRKSNE----------------------------------
H2MNP3_ORYLA/246-380QPCIMLWAQN------LNVSTKSGEW------------------IDLAT-----QT------PQL-TGS--------CSP
T1GR42_MEGSC/55-207DTEISGLYND------AVNTFGSGQVLAILACKDGEGHYLYKREANDPK-----TTTSEPEKTEE-DFVY-------ISQ
H3ARB6_LATCH/215-359DTCIIFYATK------LSFTFKKALQ------------------FDLTN-----LTFVSHE-VNF-SSSV-------CSD
B4QH65_DROSI/200-309NQFQIFYTAL------L-------------------------------------YNGNPITVTDL-KLSN-------ASS
H2TEQ4_TAKRU/263-401APCIMLWAEK------LNVALSASQP-----------------WIDLAA-----ET------PSF-DGST-------CNN
T1GT43_MEGSC/195-315DPGFAIYYEK------LQLCTYNS---------------------DAKK-----TTCESLTSTNL-KTSN-------ANT
G3PBR8_GASAC/234-369NPCVMLWAQN------LNISLTGETA-----------------WIDLAA-----QV------PSL-TGST-------CNS
A0A5F8GNM6_MONDO/69-216TPCILFWAKR------IIIKFKNQLL------------------LDLTD-----KTFGKEARVDV-GNSN-------CSD
I3KI82_ORENI/225-364GPCIMLWAQK------SHCQTG----------------------SELTM------------------DRP-------CSA
K1RE19_CRAGI/241-363SSCILMYVRS------INIGNSTQL-------------------NDTKS-----FTMTNHSCVDN---------------
F1NNV6_CHICK/244-390DTCILFYASN------FSLVANGSVL------------------IELTD-----ATFVNRS-VDV-SSSV-------CSD
E9G8H5_DAPPU/225-383GKLFLFFEKA------PVLKIKDEKK------------------NEWAN-----FTLNVDPDTTG-TFVN-------ETG
H2ZWR4_LATCH/264-409NTCIIFWAKH------FAVSFENKK-------------------IDLTN-----LTFGKNP-VNV-GNSS-------CNQ
VAS1_BOVIN/262-403DTRILFWAQN------FSVAYGEHW-------------------EDLTS-----RTFGVQD-LNL-TGSF-------WND
E2A4R1_CAMFO/183-309DQILFYSSKS------LSFKAPENPDKNLELPGSKATGSSRKEQN-----------------------------------
A2AR67_DANRE/251-394QPCIMLWADT------LLAAYDGNQ-------------------ADLAS-----NIFNST--PDT-TGSF-------CNE

PF01299

G3WW03_SARHA/221-368PSVSKYNVSG--ING-TCLLASMGLQLNFTY-EKKDNTSVRR-IININP-----NKTAVNGSCSP-QVAV--LE---LNT
F6SH38_HORSE/213-361PSVNKYNVSG--TNG-TCLLATMGLQLNITY-ENRDNMTVTR-VFNINP-----NKTRVNGSCTA-QLVT--LE---LRD
H2TLI2_TAKRU/214-354PTTGNYSLKVNVNST-ACLLANFGLRIGVKLGKKYE-------EMNLDP-----NVTAASGSCGV-DSSQ--LM---LVS
M3WKD0_FELCA/222-370PSVHKYNVSG--ANG-TCLLASMGLQLNVTY-SKRDNTTVSG-LFSIDP-----SNTSATGSCGP-QLVT--LD---LRS
F6W221_MONDO/221-361PHPGTYSVKN--GSC-ICLLATMGLQLNIT------KNKGTS-LKNLNP-----NTTDYDGVCLK-ESAL--LW---LND
F7DYE7_ORNAN/222-360AAVGTYRVSN--GSR-TCVKAVMGIQLIVQ--DRQM-----G-YFNIDP-----NVTKASGSCET-WKAN--LL---LTF
F7FD69_ORNAN/226-366PYPGKYAVKN--GND-TCLLATMGLQLNVT------QNKVNS-VININP-----NVTDFTGSCSN-ETAE--LR---LSG
F7G445_ORNAN/212-362PSVHTYNITD--ANGTTCLLVSMGLQPNVTY-EKKDSKMAVD-VFNINP-----NKTLVKGNCTS-PAVT--LE---LQS
H0YZ71_TAEGU/233-378PVTGNYSLKS--GNK-TCFLATVGLQLNVSQ-EKPL-------LININP-----KTTVADGACGN-TTAT--LK---LND
H0ZFX0_TAEGU/215-363PTVGKYNVTG--PNG-TCVLAYMGLQLNITY-QQKDEKMGLD-LLNFVP-----HNTTSSGRCDN-TSAL--LN---LTF
I3LMN2_PIG/108-251AKTGIYQVLN--GSK-LCIKAEMGIELTVQ--DTQSVFSPQR-YFNIDP-----NTTQASGNCGS-RKSK--LL---LNF
M3W2D0_FELCA/277-417PEVGSYSVNN--SNG-TCLLATMGLQLNIT------HEKVAS-IININP-----NTTDFTGNCHP-QSAL--LR---LNS
H2L680_ORYLA/296-434PSTGKYNLTT-PNNT-VCLLASFAVRISFTQ-AGKN-----E-EMNLDP-----AVTKASGQCGE-NSSE--LE---LVS
H2LIM4_ORYLA/219-368PEQGSYSVKN--ASGTVCLMAKMGVQLNVSYFSQSQNKTVQE-LLNLTP-----NLTSSSGLCGG-TNAT--LV---LAQ
M4AGT2_XIPMA/222-356PTVGNYSFKHDVNST-ACLLANFGLRIGFT-----QNK-----EVNFDP------PTEVSGSCGV-DSSE--LI---LMS
U3INR4_ANAPP/232-376PVTGNYSLKS--GNK-TCLLATVGLQLNVSQ-DKPL-------LININP-----KTTSTDGTCGN-TSAT--LK---LND
A0A1X7VVP7_AMPQE/124-280PEKEILVIED------NCFFFEATEIIFTYYDKRFSNTTTSH-LSTLYP-----DPIDAVIGCTK-DSRLHSFKRSYFNA
A0A2I2YG68_GORGO/155-303ETIGDYTWTN--GSQ-PCVHLQAQIQIRVMY-TTQGGGEAWG-ISVLNP-----NKTKVQGSCEG-AHPH--LL---LSF
E7ETP9_HUMAN/199-342VKTGIYQVLN--GSR-LCIKAEMGIQLIVQ--DKESVFSPRR-YFNIDP-----NATQASGNCGT-RKSN--LL---LNF
F1RN44_PIG/213-361PVVSRYNVSG--ANG-TCLLASMGLQLNVTY-RTKDNTTVTR-GLNINP-----NKTTFGGSCSA-QLVT--LE---LQG
F7AKL6_CALJA/218-358PEAGTYSVNN--GNG-TCLLATMGLQLNIT----QDKVAS---VININP-----NTTHSTGSCQS-HTAL--LR---LNS
F7D889_MONDO/223-370PPIFKYNVSD--ANG-TCLLASMGLQLNITY-AKKDNSSARI-IWNINP-----NKTVAGGSCSP-QVAI--LE---LQT
G1K8E2_ANOCA/219-366PKIGRYNVTG--LHG-ICLLATMGLQVNVTY-STKNKTSKSE-LLNLPP-----TAEVS-GTCEN-SSIT--LN---LTS
G1P042_MYOLU/142-290AAVGDYTWTN--VSL-PCVHLQAQIQIRIRY-PTQGGKEAWG-ISVLNP-----NKTTPQGGCEG-AHPH--LL---LSF
G1PK73_MYOLU/237-380AKTGIYQVLN--GSR-LCIKAEMGIQLMVQ--DRESVFSPER-YFNIDP-----NATQASGNCGF-RNSN--LL---LNF
G1PRK0_MYOLU/211-359PSVHKYNVSG--TNG-TCLLANMGLQLNVTY-KKKDDKTVTR-VFNINP-----DNTKVGGSCTT-QQVT--LE---LQS
G1QER0_MYOLU/179-326PSVHKYNVSG--TNG-TCLLASLG-QLNVTY-KKKEDKTVTR-VFNINT-----DNTKVGGSCTI-QLMT--LE---LQS
G1SP75_RABIT/235-377AKTGIYQVLN--GSR-LCIKAEMGLELMVQ--DKESVFSPQR-YFNIDP-----NTTQASGNCGC-RKSN--LL---LSF
G3GY73_CRIGR/95-243EALGNYTWTN--GSQ-PCVQLQAQIQIRILY-PTQGGGKAWG-ITTLNP-----NKTKVQGGCDH-AYPH--LS---LSF
G3I7Y3_CRIGR/209-351PIVIKYSVTG--EDG-TCLLASMTLQMNV-----KDNMTVTR-ALNISP-----NDTAS-GSCRP-HVVI--LT---VES
G3PRL2_GASAC/224-372PERGTYSVTN--GNGTALSPGLKTKSLDKPH-TVCFDRPVPE-LVNLTP-----NLTRSSGSCEA-SSAS--LV---LSQ
G3PZH3_GASAC/214-356PATGRYDVKPDQNST-ACLIAEFGLRIGVKNVEQCP-------KMNFEP-----NGTTSSGSCGV-DSSQ--LV---LVS
G3T6X9_LOXAF/214-362PSVSQYNVSG--SNG-TCLLANMGIQLNITY-EKKDNTTVTR-IFNINP-----NGTKVSGSCTS-HLVT--LE---LRS
G3TQL3_LOXAF/234-377TKIGIYQVLN--GSR-LCIKAELGIELIVQ--DEESVFSPQR-YFNINP-----NVTQASGNCGP-RKSN--LL---LNF
G3UUP0_MELGA/215-363PAVGKYNVTG--ANG-TCVLASMGLQLNITY-LKKDGKTGLD-LLNFVP-----HNTNASGTCEN-TSAF--LN---LAF
G3WSZ9_SARHA/122-270GTVGDYFGAN--GSQ-LCVRLRAQIQMRVLY-QSHDGEKLWG-IFILNP-----NRTVAQGGCEG-NRSS--LN---LSF
G5AVV8_HETGA/215-362PSVYTYNVNG--SNG-TCLLARMALQLNISY-ARKDNTTVTR-VVNIKP-----GTTAE-GSCGA-DLVS--LE---IHS
G5BTF4_HETGA/224-367AKTGTYQVLN--GSR-LCIKAEMGIELTVQ--ETKSVFSPQR-YFNIDP-----NTTKASGNCGF-RKSN--LL---LSF
H0V483_CAVPO/132-282EAVGDYTWTN--GSQ-PCVRLQAQIQIRVLY-PTQGGGEAWG-ISVLNP-----NKTKVQGGCAD-AHTH--LR---LSF
H0VMQ8_CAVPO/216-356PEVGNYSVTQ--GNS-TCLLATMGLQLNITHDKVAS-------VININP-----NTTDVTGSCQP-KTAE--LK---LNN
H0VSW0_CAVPO/225-368AKTGTYQVLN--GSR-ICIKAEMGIQLIIQ--ETKSVFSPRR-YFNIDP-----NATKASGSCGF-RKSN--LL---LNF
H0VYG7_CAVPO/211-358PSTHRYNVSG--HNG-TCLLASMGLQLNITY-PRKDNTTVTR-VVNINP-----NVTTASGSCGT-SLVS--LE---LKS
H0WGX6_OTOGA/207-350ARIGTYQVLN--GSK-LCIKAEMGIQLIVR--DKQSVLSPQR-YFNIEP-----NATHTSGNCGF-QKSN--LL---LNF
H0X179_OTOGA/225-365PETGNYLVNS--TNG-ICLLATMGLQLNIT----QDKVAS---VINIKP-----NTTDITGSCQP-QTAL--LR---LNS
H0X1H9_OTOGA/201-349PSVENYSVNG--TNG-TCLLASMGLQLNLTY-EQRDNKTVTR-VFNINP-----SKTWANGTCSS-NLVT--LD---LWS
H3A9K8_LATCH/214-360PTKKTYKIKN--GNE-TCLLATMGLQLNFSY---NSTKPTWK-VLNLNP-----NVTNANGTCGDGDEAT--LR---LDD
H3AAU0_LATCH/211-358PETFDYNVTG--SDG-ICLLAKMGLQLNITY-KTNESQRTST-VFNIKP-----NFT-TTGICGN-NSAV--LI---VTD
H9J971_BOMMO/368-530PDQGNWTYTDSETNI-TCIVLKFAAQFNVTYTKVDNVSSFAHVVFNVPS-----NASVVNGSCAGDQWLE--IS---WLA
I3J2W4_ORENI/234-369PSTGNYSIRA-DENGTVCLLANFGLRIGIKGE-----------EMNLDP-----NRANVSGSCAV-NSSE--LI---LAS
I3J577_ORENI/212-358PQQGNYTVKD--ANDTICLLAKMGLQLNVSY--TSQNKTVQD-VLNLNP-----NVTNSTGSCGA-SSAT--LV---LTQ
I3M3B7_ICTTR/189-337PSVSRYNVSG--DNG-TCLLASMGLQLNVTY-ARRDNTTVTS-VLNINP-----NETTASGNCSS-LLVT--LE---LQS
I3MS28_ICTTR/266-406PYVGNYSVRD--GNS-TCLLATMGLQLNITQDKVSS-------VININP-----NSTGVTGSCHP-QTAQ--LR---LNS
L9KLH0_TUPCH/153-301NAIGDYVWTN--GSQ-PCVHLQAQIQIRVLY-PTQGGGKAWG-TSVLNP-----NQTKVQGGCEG-AQPH--LL---LSF
M4AXY6_XIPMA/218-366PETGVFSVTN--SSGTVCLLAKMGLQLNVSYVSQSQNKTVQE-LVNVNP-----NLTVTSGSCGG-TTAS--LV---LTQ
LAMP1_MOUSE/208-354PTVSKYNVTG--NNG-TCLLASMALQLNITY-LKKDNKTVTR-AFNISP-----NDTSS-GSCGI-NLVT--LK---VEN
LAMP2_MOUSE/223-363PTVGNYSIRN--GNT-TCLLATMGLQLNIT----EEKVPF---IFNINP-----ATTNFTGSCQP-QSAQ--LR---LNN
LAMP1_BOVIN/209-357PAVFRYNVSG--SNG-TCLLASMGLQLNVTY-RRVDNKTVTR-EFNVNP-----NKTTFGGNCSA-TLAT--LE---LHS
Q2KIW2_BOVIN/136-284EAIGDYTWSN--GSQ-PCVRLQAQIQIRVLY-PTQGGGEAWG-ISVLNP-----NRTKAQGGCEG-THSH--LL---LSF
Q3SZJ7_BOVIN/215-355PVVGSYSVVN--SNG-TCLLATMGLQLNITHDKVAS-------VFNINP-----NTTNATGSCQP-QTAL--LR---LSS
Q4FZY1_RAT/129-279GALGNYTWTN--GSQ-PCVQLQAQIQIRILY-LTQGGKKAWG-LSVLNP-----NKTKVQGGCDS-AHPH--LA---LSF
Q5BKX3_DANRE/160-303PTVGNYSVKT--DNVSDCLLAKMGLQFSF---KISGNASLQ--TVNLDP-----NVTKVNGTCGS-GGSDSSLF---LTS
LAMP3_RAT/216-358AKIGTYEVLN--GSR-LCIKAEMGIALIVQ--EKGLDSATQR-HFNIDP-----SLTHASGKCGS-QNSN--LF---LNF
LAMP3_MOUSE/218-361AKIGTYEVLN--GSR-LCIKAEMGLALIVQ--EKDLDSATQR-YFNIDP-----SLTHASGKCDS-QKSN--LF---LNF
LAMP2_CHICK/228-372PVTGNYSLKT--GNK-TCLLATVGLQLNIS----QDKPL----LINIDP-----KTTHADGTCGN-TSAT--LK---LND
LAMP3_HUMAN/223-366VKTGIYQVLN--GSR-LCIKAEMGIQLIVQ--DKESVFSPRR-YFNIDP-----NATQASGNCGT-RKSN--LL---LNF
U3JFP7_FICAL/211-356PDTGNYSLKS--GNK-TCFLATVGLQLNVS---QDKPL-----LININP-----KTTIADGACGN-TTAT--LK---LND
W5MUH1_LEPOC/224-371PLPGNYNVTN--QNG-TCLLAAMGLQLNFTYFSAVRNKTVQD-IVNLQP-----NVTKSSGSCEA-SSAT--LI---LMY
W5N6J5_LEPOC/110-259LTQGTYNVTG--TDGNVCILAQMTLRLMVQY-KNTTNSMVQG-VFIVQP-----QQTRASGNCSH-TKSS--LM---LSF

PF05827

G3VSF5_SARHA/278-418--------------SFAQ----LVLTYEN---LFG--PYLTF-KFILRNHF-YPVSARSWFT----MDRLEIHTNNS--F
F6X427_XENTR/252-398--------------INSV----LAITYKE---AVK-GNPLTL-RFFLNRRF-YPVSARFWFT----LSQVEIIYSGN--T
W5NEK7_LEPOC/252-400--------------TNSR----LVLHYGN---IQD-LQNFRV-VFMMSSKK-YPVSAREWFT----LDRLEIESSGQ--K
I3KC00_ORENI/254-403--------------TKAR----LVLNYEN---VLN-HRIFKL-IFALSQRH-YKVSARRWFT----LDAVELEYDGT--K
T1KIB7_TETUR/49-194--------------SSID----LDLTITS-------------------------NKANRYWI----VDKASIKIDSQ--E
E0VV03_PEDHC/218-321--------------EKDK----ISMT-----------VRFAFEKNDISVKFDFSSGDNDWWS----LDSAEILHSKQ---
D6X326_TRICA/158-291--------------SYTK----LYVK-----------VPVQDNNFVILQFFFYWFNT--YWS----LTSVKVSTTNG---
U4UP41_DENPD/99-247--------------RRFD----MLKRHGMFIDYFDFHATSAA-AILLHSNFQFTKSGNSYWY----LQDIHLTVNNT--S
F1R9A7_DANRE/252-401--------------THSR----LVLNYED---VLN-FRSFKL-LLVMNRRH-YKVSARHWFT----MDLVQLEYDGK--K
F4W9X4_ACREC/176-295--------------STVI----LTIKLTDQ-TINN-----------LTLEFFFEVKSAGYYT----LNKVTTN------G
H2MNP3_ORYLA/246-380--------------SNSQ----LVLSYP---------SGYVL-SFSMSQRF-YPVSARNWFS----LDTVELEVGGV--S
T1GR42_MEGSC/55-207--------------DGKG----ILYT-----------TSALILHFNIFIRFNF-TKSGGYWS----LQAANIDYNNAQIN
H3ARB6_LATCH/215-359--------------TNTM----LSMFYSN---PATGIDSLEI-RFLMSNKF-YTGSARNWFT----LDFVEIVHKSE--V
B4QH65_DROSI/200-309--------------TKLS----VVMETSD--------ATKPI-TFDVVYNG-------GYFS----LSNLVYDNSN----
H2TEQ4_TAKRU/263-401--------------TDSQ----LVLTYPT--------SGITL-SFFMSQRF-FPVSARNWFT----LNSVQLRSNGM--T
T1GT43_MEGSC/195-315--------------SNFD----VAITT----------NQGDI-TFSIELDY------AGYFE----MQNLKLGQNT----
G3PBR8_GASAC/234-369--------------SNSL----LVLTYS---------SGYIL-SFAMSQRF-YPVSARNWFT----LDSVQLQANGQ--T
A0A5F8GNM6_MONDO/69-216--------------ENAM----LSLKFGD---IDS-LKGLDI-RFILINYN--RLSVQSWFS----LHRIQILYNNS-IQ
I3KI82_ORENI/225-364NTYLGWITLHVLFFSHFR----LVLTYQ---------SGFTL-SFSMSKRF-YSVSAREWFS----LDAVELQYFNL--S
K1RE19_CRAGI/241-363--------------QTAS----LAFTYKN--------NSEIIMTMSLIMNV---NNVSGYWS----IDNATVNWNET--T
F1NNV6_CHICK/244-390--------------TNTT----LSLKYTK---PVNGINSLEI-RFLMTNMF-YGGSARNWFT----LDSVEIVQDEE-KL
E9G8H5_DAPPU/225-383--------------HTGK----LVLTYKGLSPSGPANETGKLNKASITFHF---STKRGYWY----VKETAIDFDVKIND
H2ZWR4_LATCH/264-409--------------SQAR----LGTRF-----FFLGGGTIGHRKFVMSNQY-YKVSARHWFT----LDHVEISYNGT--N
VAS1_BOVIN/262-403--------------TVAR----LVLTYDS---LFG--TMVTF-KFILANSY-YSVSARHWFT----LENLEIHSNGS--V
E2A4R1_CAMFO/183-309--------------GTLI----LTINFSNIEDIEE-----------LTLDFFFPIKYMGYYT----LDKVNYETKGG-KN
A2AR67_DANRE/251-394--------------TVSR----LVLNYRN---ILN-LQSLQL-IFSMSKIF-FPVSARNWTV----MDQVVLEYDGQ--R

PF01299

G3WW03_SARHA/221-368--------------ENST----LTFRFGMN-AT---TSKFFLQGILLNMTL--SDAKKPSFE----AFNYSLKELQ----
F6SH38_HORSE/213-361--------------EDVT---LLVFHFGMN-AT---SSQFFLQEIQLDMTL--PDARDPTFK----AANSSLRALQ----
H2TLI2_TAKRU/214-354--------------DSVN----ITLTFTND------TKKFRLHVFNAAGKT----RSGMPFS----ESNNNLTLWE----
M3WKD0_FELCA/222-370--------------SRIH---SLLFQFGMD-PN---TSQFFLQGIQLNMTV--PDARDPTFQ----ADNSSLRALQ----
F6W221_MONDO/221-361--------------SNLG---FLELLFAIK--N---GNRFYLKGVNVSLTF----VNGSDFV----AVNNNLNCWD----
F7DYE7_ORNAN/222-360--------------SGGF----VNFNFTKD------GGSYYISSIEARLTV---SSPKVDHH----GVKREVQWFK----
F7FD69_ORNAN/226-366--------------SNVK---YIDFIFAVK--N---GNRFYLKEVNVSISF----VNASDLN----VANNNLSYWD----
F7G445_ORNAN/212-362--------------ENTT---SLTFQFGMN-ET---TTKFFLEGIHLRTAL-PPDAKEMWFD----AANTSLKALQ----
H0YZ71_TAEGU/233-378--------------GNST---LIGFTFAVK-NTSASVQKFYLREVNVTLLN--RLNGSVISS----ADNSNLSKWD----
H0ZFX0_TAEGU/215-363--------------EKTR----VIFQFALN-AT---AEKFFLQGVSVSTTL-PSEAKNPKFE----ATNNSMSELR----
I3LMN2_PIG/108-251--------------QGGF----VNLTFTKD------ENSYYVSGVGAYLTV---SNPEKVYQ----GMKNAVVMFE----
M3W2D0_FELCA/277-417--------------SNIK---FLDFVFAVK--N---ENRFYLKEVNISMYL----VNGSVFS----IANNNLSYWD----
H2L680_ORYLA/296-434--------------DQMT----LTLAFTND------AKKFRLQALNVTLKT-----SSGVFA----DGNANLSLWE----
H2LIM4_ORYLA/219-368--------------EETT---VLSFLFTVN-ST---SNKYHLSGITLQANW---TDMMSPFS----ASNTSLDYLR----
M4AGT2_XIPMA/222-356--------------NGIN----VSLSFYND------TKKFRLHAVNVTLNT------SSGID----YPGANLSLWE----
U3INR4_ANAPP/232-376--------------GNST---LIDFTFIVN-ASA-SVRKFYLKEVNVTLLN--HLNGSVILN----ADNNNFSKWD----
A0A1X7VVP7_AMPQE/124-280--------------TSGSSVLNLTFEFALN-YV---EDSWYLSSLQVVNLT----DGGRIFDYGTCGDAINVPEEL----
A0A2I2YG68_GORGO/155-303--------------PYGH----LSFGFMQD-LQ---QKVVYLSYMAVEYNVSFPHAAQWTFS----AQNASLRDLQ----
E7ETP9_HUMAN/199-342--------------QGGF----VNLTFTKD------EESYYISEVGAYLTV---SDPETIYQ----GIKHAVVMFQ----
F1RN44_PIG/213-361--------------ESLR---LLALQFALN-TS---SSRVFLQGVQLNMTL--PDARDPSFS----AANSSLRALQ----
F7AKL6_CALJA/218-358--------------STIK---YLDFVFAVK--N---ENRFYLKEVNVSMNL----VNGSVFS----IANNNLSYWD----
F7D889_MONDO/223-370--------------ENST----LAFSFGMN-AT---TSKFFLREIRFHKFF--PDAKDPAFG----AVNSSLKELQ----
G1K8E2_ANOCA/219-366--------------ESTS----LSFQFSQN-TS---TEKYFLQGIIVTANL-PPEATEKNIS----YSNHTLNALK----
G1P042_MYOLU/142-290--------------PYGQ----LSFGFKQE-PL---QSTVYLNSVAVEYNVSFPQATQWTFS----VQNSSLRELQ----
G1PK73_MYOLU/237-380--------------QGGF----VNLTFTKD------ENSYYINEVGAYLTI---SNPEKIYQ----GMKSSVMMFE----
G1PRK0_MYOLU/211-359--------------EAST---FLAFQFGKN-AS---SSRFFLKEIQLNMTL--PDAKVPTFQ----ASNSSLRALQ----
G1QER0_MYOLU/179-326--------------ETST---FLVFQFGMN-CV---GVFFFFQEIQLNMTL--PDTKDPTFK----ATNSLLRALQ----
G1SP75_RABIT/235-377--------------QRGF----VNLTFTRD------EKSYYISEVGALLMV---SNPEKTYQ----GKKSAM-AFK----
G3GY73_CRIGR/95-243--------------PYGR----LTFGFKQD-ME---QGTVYLNYMAVEYNVSFPQAAQWTFS----AQNSSLRELQ----
G3I7Y3_CRIGR/209-351--------------RNSI----LDLKFGMN-GS---SSLFFLQEVQLNMTL--LDANVSSLI----TSNQSLRALQ----
G3PRL2_GASAC/224-372--------------GEST---TLNFTFTLN-TT---SNKYHLSGISLVANW---SDSTAPVS----ASNSSLDYLR----
G3PZH3_GASAC/214-356--------------NAVT----ITLTFLNV-QD---TKKFHLHALNVTGKT----SSGVAFS----EANTNLSLWE----
G3T6X9_LOXAF/214-362--------------EVIT---LLAFTFGMN-AS---SSRFFLQEIQLNTTF--PDAKDPSFK----AINDSLRALQ----
G3TQL3_LOXAF/234-377--------------QGGF----VNFTFTKD------ENSYCISEVGAFLTD---SHPERIYQ----GMKSAMVLFE----
G3UUP0_MELGA/215-363--------------EKTK----ITFHFVLN-AS---SEKFFLQGVNVSTTL-PSEAKAPMFE----ASNDSMSELR----
G3WSZ9_SARHA/122-270--------------PEGK----LIFGFKQD-SI---MKSVYLSYLATEFNVSFPSAIRWTFS----AENSSLQDLQ----
G5AVV8_HETGA/215-362--------------ENIV---VLGLHFRMN-SS---ASRFFLETVELNMTV--PDAPGPTVQ----AANNSLRALQ----
G5BTF4_HETGA/224-367--------------PGGS----VNLTFTKE------ENSYYISEVGAYLTV---SNPEKAFQ----GLKTGMVMFE----
H0V483_CAVPO/132-282--------------PYGH----LSFGFKQA-VQQ-SQSVVYLSYMAVDYNVSFPRAAQWAFL----AQNSSLRDLQ----
H0VMQ8_CAVPO/216-356--------------SDIK---YLEFVFAVK--N---ENRFYLKEVNASIVL----ANGSVFS----TANNSLSYWD----
H0VSW0_CAVPO/225-368--------------PSGS----VNFTFTKE------ENSYYISEIGANLTV---SNPERDFQ----GLKSAMVMFE----
H0VYG7_CAVPO/211-358--------------EESL----LVLRFGLN-AS---ANRFFLHEVQLNMTV--PDARGPSFS----AANSSLRALQ----
H0WGX6_OTOGA/207-350--------------QGGF----VNLTFTKD------EKSYYINEVGASLTV---SNPEIIYR----GLKSGMVMFE----
H0X179_OTOGA/225-365--------------STIK---YLEFVFAVK--N---ENRFYLKEVNFSMYL----VNGSVFS----IANDNLSYWD----
H0X1H9_OTOGA/201-349--------------EDVA---RLVFQFGMN-AN---STRFFLQDIQLSMIL--ADARDPHFT----ASNGSLMALQ----
H3A9K8_LATCH/214-360--------------HTMV----VTFTFAVK-NS---TRKFYLKEVLVNVRS--FDNGSAPFY----DGSTNLSYWE----
H3AAU0_LATCH/211-358--------------KDTV----LSFFFALN-TC---EQVYHCSALKLPSSW-SQWNFISNFS----VHNDSLGYMR----
H9J971_BOMMO/368-530--------------PNTTIANNMTIYYHKN-KT---TNNYYLKSLNVSFSPELFVNASKANS----LELYHGNEWM----
I3J2W4_ORENI/234-369--------------KEMT----IKFTFTND------TKKFRLHALSISVST-----GSGNFS----AENSSLNLWE----
I3J577_ORENI/212-358--------------TQST---ILTFNFTLN-ST---TNKYHLSGVTLIANW----FDSAHFS----MSNNSLNYLR----
I3M3B7_ICTTR/189-337--------------KKGM---VLVLWFGMN-AS---SSRFFLQGIQLNATF--PDAKEPTFR----ATNTSLRALQ----
I3MS28_ICTTR/266-406--------------SNIK---YLDFVFAVK--N---ENRFYLKEVNVSLNL----ANGSVFS----IANNNLSYWD----
L9KLH0_TUPCH/153-301--------------PSGH----LHFGFQQE-AQ---QSTIFLSYMAVEYNVSFPHAAQWTFS----AQNSSLRDLQ----
M4AXY6_XIPMA/218-366--------------QTTT----LNFTFSMN-ST---TSKYHLSGINLLANW---SDMTAPFS----ASNTSLDYLR----
LAMP1_MOUSE/208-354--------------KNRA----LELQFGMN-AS---SSLFFLQGVRLNMTL--PDALVPTFS----ISNHSLKALQ----
LAMP2_MOUSE/223-363--------------SQIK---YLDFIFAVK--N---EKRFYLKEVNVYMYL----ANGSAFN----ISNKNLSFWD----
LAMP1_BOVIN/209-357--------------ENLL---LLALQFVMN-ES---SSRVFLQGVQLNLTL--PDAKEGSFT----ATNSSLRALQ----
Q2KIW2_BOVIN/136-284--------------PSGQ----LSFGFKQD-PL---QSAVYLNYMAVEYNVSFPQAVQWTFS----VQNSSLRDLQ----
Q3SZJ7_BOVIN/215-355--------------SNIK---YLDFVFAVK--N---ENRFYLKEVNVSMIL----VNGSVYS----ISNTNLSYWD----
Q4FZY1_RAT/129-279--------------PYGQ----LTFGFKQD-RHQ-SHSTVYLNYMAVEYNVSFPQAAQWTFS----AQNSSLQELQ----
Q5BKX3_DANRE/160-303--------------KDIT----VHFVFTND------SQKFRLHALTLTVDL----GNGNIFN----DSNTNLSLWE----
LAMP3_RAT/216-358--------------QGGS----VNVTFTKE------ENLYYVSEVGAYLTI---SNTEKTYQ----G-KSTMMMFE----
LAMP3_MOUSE/218-361--------------QGGS----VNITFTKE------ENLYYISEVGAYLTI---SNTEKTYQ----GKKNTLMMFE----
LAMP2_CHICK/228-372--------------GNRT---LIDFTFIVN-ASA-SVQKFYLREVNVTLLN--YQNGSVILS----ADNNNLSKWD----
LAMP3_HUMAN/223-366--------------QGGF----VNLTFTKD------EESYYISEVGAYLTV---SDPETIYQ----GIKHAVVMFQ----
U3JFP7_FICAL/211-356--------------RNST---LIGFTFAVKNTSA-SVQKFYLREVNVTLLN--RLNGSVISS----ADNSNFSKWD----
W5MUH1_LEPOC/224-371--------------ERTN----LTFTFTLN-ST---VKKYHLSALGVDASL--PDMTAP-FS----ASNATLDVLR----
W5N6J5_LEPOC/110-259--------------HQGH----ITFLFTKD-SK---KNSVFVDSVDVSLNYMFPNAKETNFE----ATNSSVELFK----

PF05827

G3VSF5_SARHA/278-418VVFN------SSH-IT----APSIYSFHCQSVSTDRSKDGLLMSS-----PSS----AWRVNFQNFQIQAF---
F6X427_XENTR/252-398ATFL------APQ-VN----APSNYSFHCQYISSWPTFGSVLVSNTSKDSPAS----KWQLHIAEFQIQGF---
W5NEK7_LEPOC/252-400ATFN------ASRNIY----APRNYSFHCATVTSFR--DPLLVPS---SDSAS----KWRVSFSDFQIQGF---
I3KC00_ORENI/254-403ATFN------GSRNIY----APAEYSYRCESVTSFQ--WPLLVPR-TSKDPAN----QWRVSFEDFQIQGF---
T1KIB7_TETUR/49-194FNLK------ATE-LT----AADTFSFSCSSAIVQS-------IKSSKDTSKD----FAIVQIKRLQLQPF---
E0VV03_PEDHC/218-321-TLN------PTEEVG----APYDYSYFCNPSIVFS---------------SK----EASLTFDNFQVQPR---
D6X326_TRICA/158-291-NFS------TTLNITEPFLVPAGFSYHCNGLTTFK----------DTAKDNS----KTELRIYDLQVQID---
U4UP41_DENPD/99-247FNQT------TNGTIY----APLGFSYACGNQVFKS----------------T----NLAVTFPQFQVQPT---
F1R9A7_DANRE/252-401ASFN------GSRHIY----APSEYSYRCESVSSSY--YAQLSPH-SDKDNAN----DWQISFENFQIQGF---
F4W9X4_ACREC/176-295VDLF------TKRDIS----FPFGFSYHCSPKTTFT---------------DG----TTFLSITDMQVQVD---
H2MNP3_ORYLA/246-380ASYA------GSRGIY----APAEYSFRCQSVNNFQ--DALLVRN-NTNSSLS----VWSLNFIDFQIQGF---
T1GR42_MEGSC/55-207SILP------ISR-RSCLPEAPIGFSYRCSSSDLFF--------------NGT----DGNLTIKDFQVQPW---
H3ARB6_LATCH/215-359ARFN------VS--IS----APAEYSFHCQLVGTSSIYGAQLIPS---NTEAE----NWEILISEFQIQGF---
B4QH65_DROSI/200-309--FR------SSG-VN----APTTFSYSCGNLTLES-----------SAVNNM----YNTLSFKSLQLQAP---
H2TEQ4_TAKRU/263-401ATFI------GSRGIY----APAEYSYHCQSVSSSQ-DDALLVLS-SANQSTS----AWRLDFVDFQIQGF---
T1GT43_MEGSC/195-315--FR------VNPAVN----SPTTFSYFCGNKTFYQ-----------YGEGAN----TLSLSFNVLQMQAP---
G3PBR8_GASAC/234-369SSFT------GSRNIY----APAEYSFHCQSVTSFR--DILLVAN--KTNPSP----LWRLNFIDFQIQGF---
A0A5F8GNM6_MONDO/69-216ATFK------ATR-IH----APSKYSYHCQHVSSLQRYDALLVPS-STNDISR----LWEVTFIDFQIQGF---
I3KI82_ORENI/225-364ASYI------ASRDIY----APAEYSFHCQSVANFG--DALLRTN-TTDTNSS----EWRLNFVDFQIQGF---
K1RE19_CRAGI/241-363YNVT------LSK-VS----APWGFSYHCSSLEKLV-------------ARNS----EFTMSLEGFQLQPF---
F1NNV6_CHICK/244-390AKYN------VSV-IS----APAEYSFHCQLVGTSSLYLARLIPS---NFEAI----NWDVFISRFQIQGF---
E9G8H5_DAPPU/225-383ATFVENNLILVTTDIS----TPLRRSWHCSPASRLA--SYGFTYNGTVMNYTN----KVILNTDGFQLQPF---
H2ZWR4_LATCH/264-409ATFN------ASQ-VY----APQKYSYHCEYVSSERYYDSLLVPY-SQTGPAK----NWQITIKDFQIQGF---
VAS1_BOVIN/262-403AYFN------ASQ-VT----GPSIYSFHCEHVSSENEDGNLLVPD----TQPS----LWQMTFRDFQIQAF---
E2A4R1_CAMFO/183-309GVLS------SKRDIC----FPYNFSYHCSLQTIFT---------------NG----PVRLNITDMQVEVD---
A2AR67_DANRE/251-394AMFN------ASAGIN----TPAEYSFRCQNVSSAQ--SPLLVPR-NATDNAT----KWTLIFTDFQIQSF---

PF01299

G3WW03_SARHA/221-368--------------------ASVGNSYKCNAEENVQ--------------VTE----SFSVNIFKVRVQAFKVE
F6SH38_HORSE/213-361--------------------ATIGNSYRCNAEERLR--------------VTE----ALSVNVFRVWVQAFQVE
H2TLI2_TAKRU/214-354--------------------ASLSSSYMCNKEQNYS--------------ISD----VLTIFTFNLHVQPFGVK
M3WKD0_FELCA/222-370--------------------ATIGNSYKCNAEERVE--------------VTE----AFSVNIFKVWVQAFQVQ
F6W221_MONDO/221-361--------------------APIGSSYMCIKEDSIP--------------VSD----TFQINTFDLRVQPFNVV
F7DYE7_ORNAN/222-360--------------------TLVGHSFQCLSAQRVQ--------------LGN----DLQLQTVNVQLQAFDIT
F7FD69_ORNAN/226-366--------------------APLGSSYMCNKEQTLA--------------LAD----SLQINTFNLRVQPFSVV
F7G445_ORNAN/212-362--------------------ATVGNSYRCNTEESVR--------------VTK----DCSVNIFTVQAQAFRVE
H0YZ71_TAEGU/233-378--------------------AFLGSSYMCRKEQTLQ--------------INE----NVQVHTFNLWIQPFLVE
H0ZFX0_TAEGU/215-363--------------------ASVGNSYKCSSEENLQ--------------VTD----QALVNVFNVQVQIFKID
I3LMN2_PIG/108-251--------------------TMIGHSFKCVSEQSIQ--------------LSP----HLQLNTMNVQLQAFDFE
M3W2D0_FELCA/277-417--------------------APLGSSYMCNKEQTVS--------------VSG----AFQINTFDLRVQPFNVM
H2L680_ORYLA/296-434--------------------AAIGTSYMCNREQNFN--------------ITN----MLSLYTSNLQVQPFEVK
H2LIM4_ORYLA/219-368--------------------SSLGHSYMCNAEQTLF--------------VVS----TFSINMFELQVQPFGVT
M4AGT2_XIPMA/222-356--------------------AAVGSSYMCNKEQNFT--------------ITD----LLSIYTFSLHVQPFGVK
U3INR4_ANAPP/232-376--------------------AFLGNSYMCRKEQTLE--------------INE----DLQVHTFNLWVQPFLVK
A0A1X7VVP7_AMPQE/124-280--------------------SYFCSQVNCHGHEQVD--------------DSI----SVSLDITNLRVDAFVKS
A0A2I2YG68_GORGO/155-303--------------------APLGQSFSCSNS-SII--------------LSP----AVHLNLLSLRLQAAQLP
E7ETP9_HUMAN/199-342--------------------TAVGHSFKCVSEQSLQ--------------LSA----HLQVKTTDVQLQAFDFE
F1RN44_PIG/213-361--------------------ATAGNSYKCRSEQRLQ--------------VTE----AFALNVFQVRVQAFRVD
F7AKL6_CALJA/218-358--------------------APLGSSYMCNKEQTVS--------------VSG----AFQINTFDLRVQPFNVI
F7D889_MONDO/223-370--------------------ATVGNSYKCNAEENVH--------------VTD----GFSVNIFRVRVQAFKVE
G1K8E2_ANOCA/219-366--------------------TSVGKSYKCIAEESIW--------------ISG----KAAVNIFNIQLQAFKIP
G1P042_MYOLU/142-290--------------------APLGQSFSCRNA-SII--------------LSP----AFHLDLLFLKLQAARLP
G1PK73_MYOLU/237-380--------------------TVIGHSFKCVTEQSIQ--------------LSA----YLQLKTMNVQLQAFDFE
G1PRK0_MYOLU/211-359--------------------ATMGNSYKCNAEEHIW--------------VTE----AFSVNIFKVWVQAFQVE
G1QER0_MYOLU/179-326--------------------ATIGNSYKCNAKEHIW--------------VTE----AFSVNIFKVWVQAFQVE
G1SP75_RABIT/235-377--------------------TLIGHSFKCVSEQSLQ--------------LSH----LLQLRTTNVQLQAFDFE
G3GY73_CRIGR/95-243--------------------APLGQSFCCRNT-SIV--------------LSP----AVHLDLLFLRLQAAQLP
G3I7Y3_CRIGR/209-351--------------------ATVGNSYKCNTEEHIY--------------VTK----EFSLNVFSVQVQAFKVE
G3PRL2_GASAC/224-372--------------------STLGRSYMCNAQQTLV--------------VVS----NFSVNTFRLQVQPFNVT
G3PZH3_GASAC/214-356--------------------AAVGSSYMCNKEQNYT--------------ITG----LLTLYTFDLRVQPFGVN
G3T6X9_LOXAF/214-362--------------------ATVGNSYKCNAEESIQ--------------VTK----AFSVNIFQVWVQAFKVE
G3TQL3_LOXAF/234-377--------------------TTAGHSFKCVSEQSIR--------------LST----HLQLKTTNVQLQAFDFE
G3UUP0_MELGA/215-363--------------------ATVGNSYKCSAEENLQ--------------VTD----KALVNVFNVQVQAFKVD
G3WSZ9_SARHA/122-270--------------------APLGYSFCCRNR-SIA--------------LSP----EIHLDLLALQLQAAQLL
G5AVV8_HETGA/215-362--------------------ATIGSSYRCTTEERLR--------------ITP----SFFLNLFSVQVQAFKVE
G5BTF4_HETGA/224-367--------------------TVVGHSFKCVSKQSTQ--------------LSA----QLQLKTMNVQLQAFDFE
H0V483_CAVPO/132-282--------------------APLGQSFSCGNA-SIL--------------VSR----GFHLDLLSLRLQAAQLP
H0VMQ8_CAVPO/216-356--------------------APLGSSYMCNKEDTLS--------------VSE----AFQINTFGLRIQPFNVK
H0VSW0_CAVPO/225-368--------------------TLAGHSFKCVSEQSIL--------------LSA----QLQLKTMNVQLQAFDWE
H0VYG7_CAVPO/211-358--------------------ATVGNSYKCSAEERLH--------------ITP----AFVLNLFSVQVQAFKVE
H0WGX6_OTOGA/207-350--------------------TVLGHSFRCVSEQSLQ--------------LSA----QFQLQTMNVQLQAFDFE
H0X179_OTOGA/225-365--------------------APLGSSYMCNKEQTVS--------------VSG----AFQINTFDLRVQPFNVM
H0X1H9_OTOGA/201-349--------------------ATLGNSYKCNAEERIQ--------------VTK----AFSVNIFKVWVQAFKVE
H3A9K8_LATCH/214-360--------------------ASLGSSYMCSKEQKFK--------------VTD----RLSFNTFELRVQPFKVE
H3AAU0_LATCH/211-358--------------------ASLGKSYMCNSEQKIQ--------------VAM----NFSINAFNVRIQAFKID
H9J971_BOMMO/368-530--------------------TPVATSYRCEVATRFN--------------MSSDSLTAASMTLTRLQEEAYRTA
I3J2W4_ORENI/234-369--------------------TSIGSSYMCNKEQTFN--------------ITD----ALTIYTFSLHVQPFGVN
I3J577_ORENI/212-358--------------------STLGYSYMCNAEQTLF--------------VTP----SFSLNTFDLQVQPFGVK
I3M3B7_ICTTR/189-337--------------------ATVGHSYKCNTEEHIR--------------VTQ----AFSLNVFRVWVQAFQVE
I3MS28_ICTTR/266-406--------------------APLGSSYMCHKEQTVS--------------VSR----TFQINTFELRVQPFNVM
L9KLH0_TUPCH/153-301--------------------APLDRSFSCRNA-SIT--------------LSP----ALHLDLLFLRLQAAQLP
M4AXY6_XIPMA/218-366--------------------STLGRSYMCNTEQTLL--------------VVP----AFSLNTFRLQVQPFGVT
LAMP1_MOUSE/208-354--------------------ATVGNSYKCNTEEHIF--------------VSK----MLSLNVFSVQVQAFKVD
LAMP2_MOUSE/223-363--------------------APLGSSYMCNKEQVLS--------------VSR----AFQINTFNLKVQPFNVT
LAMP1_BOVIN/209-357--------------------ATAGNSYKCNAEQRLR--------------VTS----SFSLNMFRVWLQAFRVD
Q2KIW2_BOVIN/136-284--------------------TPLGHSFSCRNA-SII--------------VSP----ALHLDLLSLKLQAAQLS
Q3SZJ7_BOVIN/215-355--------------------APLGSSYMCNKEQTVS--------------VSG----AFQINTFDLRVQPFSVT
Q4FZY1_RAT/129-279--------------------APLGQSFCCGNT-SIV--------------LSP----AIHLDLLSLRLQAAQLP
Q5BKX3_DANRE/160-303--------------------ASVGSSYMCRKEQSYN--------------ISD----KLTLNTFELQVQPFDVK
LAMP3_RAT/216-358--------------------TVVGHSFKCVSEQSIQ--------------LSA----QLQMKTMNIHLQAFDFE
LAMP3_MOUSE/218-361--------------------TVVGHSFKCVSEQSIQ--------------LSA----QLQMKTMNIHLQAFDFE
LAMP2_CHICK/228-372--------------------ASLGNSYMCRKEQTLE--------------INE----NLQVHTFNLWVQPFLVK
LAMP3_HUMAN/223-366--------------------TAVGHSFKCVSEQSLQ--------------LSA----HLQVKTTDVQLQAFDFE
U3JFP7_FICAL/211-356--------------------AFLGSSYMCRKEQTLQ--------------INE----DVQVHTFNLWIQPFLVE
W5MUH1_LEPOC/224-371--------------------GTLGKSYMCNSKQTLV--------------VSD----RFSVNTFRLQVQPFGVS
W5N6J5_LEPOC/110-259--------------------TRIGHSYSCKNE-TVI--------------MRP----YLYLELSEQKIQAFNIT

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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