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653  structures 8620  species 0  interactions 146660  sequences 5054  architectures

Clan: Pec_lyase-like (CL0268)

Summary

Pectate lyase-like beta helix Add an annotation

This superfamily all contain a right handed beta helix similar to that first found in pectate lyase [1].

This clan contains 41 families and the total number of domains in the clan is 146660. The clan was built by A Bateman.

Literature references

  1. Jenkins J, Mayans O, Pickersgill R; , J Struct Biol. 1998;122:236-246.: Structure and evolution of parallel beta-helix proteins. PUBMED:9724625 EPMC:9724625

Members

This clan contains the following 41 member families:

AC_1 Adeno_E1B_55K AIDA B_solenoid_dext B_solenoid_ydck Bactofilin Beta_helix Beta_helix_2 Beta_helix_3 Chlam_PMP Chondroitinas_B Cthe_2159 Disaggr_assoc DUF1565 DUF2154 DUF2807 DUF3737 DUF4097 DUF4957 DUF5649 End_N_terminal FapA Fil_haemagg Fil_haemagg_2 Glyco_hydro_28 Glyco_hydro_49 Glyco_hydro_92 IPU_b_solenoid MinC_C NosD PATR Pectate_lyase Pectate_lyase_3 Pectate_lyase_4 Pectinesterase Pertactin Phage_spike_2 PhageP22-tail Toast_rack_N TPS VacA

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Beta_helix (PF13229) 23649 (16.1%) View
Glyco_hydro_28 (PF00295) 19612 (13.4%) View
Pectinesterase (PF01095) 15781 (10.8%) View
PATR (PF12951) 11201 (7.6%) View
Pectate_lyase_3 (PF12708) 9470 (6.5%) View
Pectate_lyase_4 (PF00544) 8032 (5.5%) View
Glyco_hydro_92 (PF07971) 7669 (5.2%) View
DUF4097 (PF13349) 6983 (4.8%) View
Fil_haemagg (PF05594) 5463 (3.7%) View
DUF2807 (PF10988) 4980 (3.4%) View
Bactofilin (PF04519) 4804 (3.3%) View
Fil_haemagg_2 (PF13332) 3645 (2.5%) View
TPS (PF05860) 3432 (2.3%) View
NosD (PF05048) 3384 (2.3%) View
MinC_C (PF03775) 3201 (2.2%) View
DUF2154 (PF09922) 2701 (1.8%) View
Pectate_lyase (PF03211) 2184 (1.5%) View
FapA (PF03961) 1622 (1.1%) View
Cthe_2159 (PF14262) 1502 (1.0%) View
DUF1565 (PF07602) 991 (0.7%) View
Chondroitinas_B (PF14592) 921 (0.6%) View
continued
Pfam family Num. domains Alignment
DUF5649 (PF18886) 861 (0.6%) View
AC_1 (PF18883) 822 (0.6%) View
Chlam_PMP (PF02415) 712 (0.5%) View
Beta_helix_3 (PF18889) 706 (0.5%) View
DUF3737 (PF12541) 452 (0.3%) View
B_solenoid_ydck (PF18836) 374 (0.3%) View
Pertactin (PF03212) 331 (0.2%) View
AIDA (PF16168) 274 (0.2%) View
DUF4957 (PF16318) 243 (0.2%) View
IPU_b_solenoid (PF18783) 115 (0.1%) View
Glyco_hydro_49 (PF03718) 115 (0.1%) View
B_solenoid_dext (PF18841) 110 (0.1%) View
PhageP22-tail (PF09251) 81 (0.1%) View
Toast_rack_N (PF17115) 73 (0.0%) View
Adeno_E1B_55K (PF01696) 54 (0.0%) View
Beta_helix_2 (PF18835) 41 (0.0%) View
Disaggr_assoc (PF08480) 37 (0.0%) View
End_N_terminal (PF12218) 26 (0.0%) View
VacA (PF02691) 4 (0.0%) View
Phage_spike_2 (PF18781) 2 (0.0%) View
Total: 41 Total: 146660
No alignment ℹ
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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