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195  structures 3829  species 0  interactions 14240  sequences 167  architectures

Clan: TolB_N (CL0342)

Summary

TolB, N-terminal domain Add an annotation

Members of this superfamily appear to behave like the N-terminal fold of the TolB transport-portal complex protein, which is beta-stranded.

This clan contains 11 families and the total number of domains in the clan is 14240. The clan was built by A Bateman.

Members

This clan contains the following 11 member families:

ABC_trans_aux CadC_C1 CsgG DUF3280 DUF799 FlgO FlgT_M LpoB LptE NLBH TolB_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
LptE (PF04390) 3672 (25.8%) View
ABC_trans_aux (PF03886) 3109 (21.8%) View
TolB_N (PF04052) 2943 (20.7%) View
CsgG (PF03783) 1852 (13.0%) View
LpoB (PF13036) 937 (6.6%) View
FlgO (PF17680) 621 (4.4%) View
DUF799 (PF05643) 393 (2.8%) View
DUF3280 (PF11684) 355 (2.5%) View
FlgT_M (PF16539) 299 (2.1%) View
CadC_C1 (PF18500) 37 (0.3%) View
NLBH (PF05211) 22 (0.2%) View
Total: 11 Total: 14240 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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