# STOCKHOLM 1.0 #=GF ID COX6B #=GF AC PF02297.20 #=GF DE Cytochrome oxidase c subunit VIb #=GF AU Mian N;0000-0003-4284-4749 #=GF AU Bateman A;0000-0002-6982-4660 #=GF SE Pfam-B_9188 (release 5.2) #=GF GA 26.00 26.00; #=GF TC 26.00 26.00; #=GF NC 25.60 25.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF WK Cytochrome_c_oxidase #=GF CL CL0351 #=GF RN [1] #=GF RM 1651883 #=GF RT Human cytochrome c oxidase subunit VIb: characterization and #=GF RT mapping of a multigene family. #=GF RA Carrero-Valenzuela RD, Quan F, Lightowlers R, Kennaway NG, Litt #=GF RA M, Forte M; #=GF RL Gene 1991;102:229-236. #=GF DR INTERPRO; IPR003213; #=GF DR SCOP; 2occ; fa; #=GF DR SO; 0000417; polypeptide_domain; #=GF CC Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the #=GF CC terminal oxidase in the mitochondrial electron transport chain. #=GF CC This family is composed of the potentially heme-binding subunit #=GF CC IVb of the oxidase. #=GF SQ 57 #=GS Q6NTR9_XENLA/19-83 AC Q6NTR9.1 #=GS Q4S4P4_TETNG/19-83 AC Q4S4P4.1 #=GS CX6B1_PONAB/19-83 AC Q5RCT0.3 #=GS Q7SXM1_DANRE/19-83 AC Q7SXM1.1 #=GS CX6B2_RAT/21-85 AC Q6YFQ1.1 #=GS CX6B2_HUMAN/21-85 AC Q6YFQ2.1 #=GS COX12_SCHPO/23-83 AC O94581.2 #=GS Q4X0M1_ASPFU/26-87 AC Q4X0M1.1 #=GS A7EYS4_SCLS1/18-79 AC A7EYS4.1 #=GS Q6C5M8_YARLI/18-79 AC Q6C5M8.1 #=GS COX12_YEAST/16-77 AC Q01519.2 #=GS COX12_YEAST/16-77 DR PDB; 6HU9 v; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6T0B j; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6T15 j; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6GIQ j; 24-77; #=GS COX12_YEAST/16-77 DR PDB; 6T0B w; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6YMX j; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6YMY j; 16-77; #=GS COX12_YEAST/16-77 DR PDB; 6HU9 j; 16-77; #=GS Q759N5_ASHGO/14-75 AC Q759N5.1 #=GS COX6B_DICDI/13-74 AC Q54P95.1 #=GS A3LRK7_PICST/17-78 AC A3LRK7.1 #=GS A5E5S4_LODEL/17-78 AC A5E5S4.1 #=GS A7RJL7_NEMVE/18-79 AC A7RJL7.1 #=GS Q5KFL5_CRYNJ/16-77 AC Q5KFL5.1 #=GS Q8IKG0_PLAF7/9-82 AC Q8IKG0.1 #=GS A0BF50_PARTE/8-71 AC A0BF50.1 #=GS Q17NB4_AEDAE/2-65 AC Q17NB4.1 #=GS Q6CKR1_KLULA/14-91 AC Q6CKR1.1 #=GS A7TTG3_VANPO/15-92 AC A7TTG3.1 #=GS Q758R6_ASHGO/14-91 AC Q758R6.1 #=GS A6ZMV9_YEAS7/14-91 AC A6ZMV9.1 #=GS Q4WXK0_ASPFU/19-94 AC Q4WXK0.2 #=GS Q0CP85_ASPTN/18-93 AC Q0CP85.1 #=GS Q6FMK4_CANGA/9-80 AC Q6FMK4.1 #=GS Q6C767_YARLI/20-95 AC Q6C767.1 #=GS Q0U111_PHANO/69-147 AC Q0U111.2 #=GS A7EBE3_SCLS1/22-97 AC A7EBE3.1 #=GS Q7S577_NEUCR/22-97 AC Q7S577.1 #=GS Q2GR00_CHAGB/27-102 AC Q2GR00.1 #=GS A5E6N3_LODEL/11-88 AC A5E6N3.1 #=GS A0A1D8PU62_CANAL/12-89 AC A0A1D8PU62.1 #=GS Q6BJ18_DEBHA/12-88 AC Q6BJ18.1 #=GS A3GI77_PICST/12-89 AC A3GI77.2 #=GS A5DI04_PICGU/37-113 AC A5DI04.1 #=GS Q5KJW3_CRYNJ/16-98 AC Q5KJW3.1 #=GS A0A0D1E536_USTMA/8-112 AC A0A0D1E536.1 #=GS A5JYU1_CAEEL/3-73 AC A5JYU1.1 #=GS Q55CY6_DICDI/29-104 AC Q55CY6.1 #=GS A7S7P0_NEMVE/140-202 AC A7S7P0.1 #=GS Q675Z3_OIKDI/181-278 AC Q675Z3.1 #=GS Q8RXH9_ARATH/8-93 AC Q8RXH9.1 #=GS Q6Z9E8_ORYSJ/24-104 AC Q6Z9E8.1 #=GS COA6_BOVIN/1-60 AC Q2M2S5.1 #=GS A0A509AJC1_PLABA/28-89 AC A0A509AJC1.1 #=GS Q209Q4_9CHLO/74-135 AC Q209Q4.1 #=GS Q6KAE3_ORYSJ/22-83 AC Q6KAE3.1 #=GS CX6B3_ARATH/14-75 AC Q9SUD3.2 #=GS Q00TI2_OSTTA/35-96 AC Q00TI2.1 #=GS Q7XY46_GRIJA/21-82 AC Q7XY46.1 #=GS Q6XHZ3_DROYA/23-84 AC Q6XHZ3.1 #=GS Q06DG6_ANOFN/12-73 AC Q06DG6.1 #=GS Q16XG7_AEDAE/22-83 AC Q16XG7.1 #=GS Q16XG8_AEDAE/19-80 AC Q16XG8.1 #=GS Q9BL34_CAEEL/55-116 AC Q9BL34.1 Q6NTR9_XENLA/19-83 ARFPN.........QNQTKHCYTNYLDYHRCLKAKDSKGQ.......................DPYP...............CEWYRRVYRSMCPLKWVEKWDEQ.....RESGTFP Q4S4P4_TETNG/19-83 ARFPN.........QNQTRNCWSNYLDYHRCQKTLDAKGV.......................DTAP...............CDWYKRVYKSLCPISWIQKWDEQ.....REEGTFP CX6B1_PONAB/19-83 SRFPN.........QNQTRNCWQNYLDFHRCQKAMTAKGG.......................DISV...............CEWYQRVYQSLCPTSWVTDWDEQ.....RAEGTFP Q7SXM1_DANRE/19-83 ARFPN.........TNQTRNCYQNYLDFHRCNKALSSKGQ.......................DTSP...............CEWYQRVYKSLCPISWVGKWDSQ.....IEDGSFP CX6B2_RAT/21-85 PRFPN.........QNQTRNCYQNFLDYHRCVKTMDRRGK.......................NTQA...............CDYYFRVFHSLCPVSWVQRWNEQ.....IKQGTFP CX6B2_HUMAN/21-85 PRFPS.........QNQIRNCYQNFLDYHRCLKTRTRRGK.......................STQP...............CEYYFRVYHSLCPISWVESWNEQ.....IKNGIFA COX12_SCHPO/23-83 R.FPN.........TNQTKHCFQSYIDYFRCIKA...KGE.......................DFVP...............CKQFWHAYQSLCPMEWVERWDEQ.....RENGTFP Q4X0M1_ASPFU/26-87 ARFPQ.........QNQTKHCWQNYVDYHKCINA...KGE.......................DFRP...............CRQFYHAYRSLCPKAWTDRWDNQ.....REAGNFP A7EYS4_SCLS1/18-79 ARFPN.........QNQTKHCWQNYVDYHKCILA...KGE.......................DFAP...............CRQFFLAYKSLCPSAWVERWDDQ.....RDNGTFP Q6C5M8_YARLI/18-79 PRFPN.........QNQTKHCWQNYVDYFKCINA...KGE.......................EFEP...............CKVFWRSYNSLCPQDWIEKWDGQ.....REKGNFA COX12_YEAST/16-77 ARFPQ.........QNQTKHCWQSYVDYHKCVNM...KGE.......................DFAP...............CKVFWKTYNALCPLDWIEKWDDQ.....REKGIFA #=GR COX12_YEAST/16-77 SS TTS-S.........SB-HHHHHHHHHHHHHHCCT...S-S.......................SCHC...............HHHHHHHHHHHS-HHHHHHHHHH.....HHTT--S Q759N5_ASHGO/14-75 ARFPN.........QNQTKHCWQSYVDYHKCVNA...KGE.......................DFGP...............CKVFFRTFSSLCPVEWVEKWDEQ.....RSKGIFP COX6B_DICDI/13-74 PRFPQ.........QNQTKHCWANYVDYYGCVKH...YNG.......................DNSK...............CQTFFNSMNSLCPAAWISEWDEQ.....KAADLFP A3LRK7_PICST/17-78 PRFPY.........QNQTKHCAQSYVDYHKCVSV...KGE.......................EFEP...............CKIFFKTFTSLCPVDWVERWDDQ.....RAAGKFP A5E5S4_LODEL/17-78 PRFPN.........QNQSKHCAQTYIDYHKCINA...KGE.......................DFEP...............CQLFFKTFTSLCPLAWVEKWDDQ.....RSAGTFP A7RJL7_NEMVE/18-79 PRFPY.........SAQTKNCWQNFVDFHKCSNK...LGE.......................DNEH...............CQWFKKTYISLCPRAWIETWTEQ.....VENGTFP Q5KFL5_CRYNJ/16-77 ARFPN.........QNQTKHCWQNFVDYHKCVNA...KGE.......................EFAP...............CQQFKKAFRSLCPNDWVGQWNEQ.....IEAGTFP Q8IKG0_PLAF7/9-82 PYFPA...........SLNGCESVSDEFFKCLNK...NLIPFGDD.............KLIKSSQQD...............CQYFKKNYEK.CTDEKLKKLKTPLMFLTEYKEKNK A0BF50_PARTE/8-71 LLTPSRY....GGESWNAQTCFAAQEDYFECLDRENSTNV.......................NRKL...............CGREHQLWKDVCPDS...........DRRAQMIFR Q17NB4_AEDAE/2-65 PKNPD.........AEKNNPCLKEQDLVHKCLNQ...NNY.......................DNSQ...............CELYFANY.KNCKDFWYRVQRDRRA..HGKYPYLP Q6CKR1_KLULA/14-91 TKAPS.........RSSRKQCWESRDLFFGCLDK...ISVVNALD............PKHQKAIKAS...............CSAEEAKFEQDCATSWISYFKEKRVVDFKREKFLK A7TTG3_VANPO/15-92 APVAN.........RQQREQCWESRDLFFKCLDN...VDIIDAND............KKNKDIIKKN...............CNIEESNFEKDCAKSWISYFKDKRISDYKKLKFKE Q758R6_ASHGO/14-91 TRAPD.........KASRQRCWESRDAYFECLDS...INVVNALD............PTATPQVRRN...............CGKQEDSFHQNCVTSWIKYFKEKRVSDSKRDAMVA A6ZMV9_YEAS7/14-91 QPPNT.........RSQRKLCWESRDAFFQCLDK...EDILDAMD............PKNSKSIKSH...............CKVENEKFEENCAHSWIKYFKEKRVIDFKREETIK Q4WXK0_ASPFU/19-94 RIAPD.........RSSREKCWEGRDLFFSCLDK...SNIIDSI..............KEDNKARRQ...............CGKELAQFEGSCAKAWVKYFKEKRVMEYNRDKTIE Q0CP85_ASPTN/18-93 RIAPD.........RTSRQRCWEGRDLFFSCLDD...NNIIDAI..............KDDKEARRK...............CAKEIAEFENACSKTWVKYFKEKRVMEYNRDKTIE Q6FMK4_CANGA/9-80 KIENN.........RANRKKCWESRDKFFSCLDK...NDILKPS..............DGVSK...................CKAENQQYETDCVSSWVKYFNEKRIVDFKREQMLK Q6C767_YARLI/20-95 KDLTK.........KKTRQICWDSRDKFFACLDK...HNIVDAI..............KDSELATAK...............CPKEEKQYEADCIASWIDYFKQKRTMEYNKEQMLK Q0U111_PHANO/69-147 FEQPN.........RSNRKQCYAARDAFFECLDK...NNVLDSINT...........KSGREKAQTF...............CGQLDQEFEKNCAHSWVEYFKKQRVVNYQREQTIK A7EBE3_SCLS1/22-97 PIAPD.........RSQRSKCWEARDAYFRCLDK...NEIIDSI..............TEKNKAEKS...............CGTEARGFEKNCATSWVEYFKKRRVMEYQRDQTLR Q7S577_NEUCR/22-97 TVAPT.........RSERQKCWMARDGYFACLDR...NNIIDAL..............KDEKAAAKA...............CKAESAEFEKDCAAQWVTYFKKWRVQDIQKKARLK Q2GR00_CHAGB/27-102 AVAPS.........RAERARCWEARDAYFACLDA...SGIVDAV..............KDDKKAAAA...............CGAESGRFEKDCAAQWVTYFKKWRVQDIQKKARLK A5E6N3_LODEL/11-88 TVAPD.........KAQRVKCWDKRDRFFQCLDE...HYIDNSLD............KKELAKVNDK...............CGEIKKEFEEDCAASWVKYFQEKRFNDLVRQRYIA A0A1D8PU62_CANAL/12-89 TFAPN.........KGQRVVCWEKRDGFFECLSK...NYIDNSLD............SKELDKVNKQ...............CGTEKKEFEQNCATSWVKYFQEKRYNDLVRQRYID Q6BJ18_DEBHA/12-88 K.PPN.........KSKRKECWEARDGFFDCLEK...NKIDNSLD............PKEEDTVKKN...............CGDLRDNFQNKCVASWFKYFQEKRYNDLIRQRYIE A3GI77_PICST/12-89 RPPPN.........KAKRKECWDARDKFFSCLAA...NSIDNSLD............EKSLPTVKSQ...............CGELKADFEGKCVATWVKYFQEKRFNDLTRQRYIE A5DI04_PICGU/37-113 V.PPN.........KSKRRECWDARDEFFECLTK...NNIDNSLD............PNVKDQVESQ...............CGSLRATFENKCVESWYKYFQEKRFSEIKKDKYIA Q5KJW3_CRYNJ/16-98 KPAPS.........REERKACWNSRDIYFGCLDK...NKVLQAGDE...........VRRDTKGNVVPG...........GVCSTERMGYESNCAKAWVDYFNKRRTLELRRLATIE A0A0D1E536_USTMA/8-112 APAPT.........RNERKACWSHRDSYFACLTR...KGVTIPPGTDMSDGRGPVGKAAKEEQERLAKEKKQTSEEARKQDPCLAERQGYESNCARSWVDYFNKRRVLEERQKMMYA A5JYU1_CAEEL/3-73 KEEPS........LKSERRKCYEARDQYAACIDK...F..LSQG..............KSEKEATNS...............CRSERKNFDGNCPTSWVNHFIRKD....QFERYKK Q55CY6_DICDI/29-104 RRAPDYHGKEESVLNSSRTKCWEARDKYFKCLDD...NKE.......................DDSK...............CKAFYNELNNSCLKSWSEYFIKKRISDKNKEAFLN A7S7P0_NEMVE/140-202 MPAPT.........TEERRKCHQTRDAYFKCVDE...NGSES...................AL...................CKEAKALYDKSCPASWVKYFARKRAYDTYK....A Q675Z3_OIKDI/181-278 EIMPK.........KIDRKACFALRDQYYDCMTR...ETAELFEIDSS.......GNLKCGYQGENSGSNCEKRIYEDAEKTCSDLKSKMSEPCLSSWIPFYTDRFKYRQSEQRLQL Q8RXH9_ARATH/8-93 SSNPNDVH..EDVLLKARDACYKARDAFYACLEK...ESGKKPTEI...........ATVGLLYPKE...............CSNSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLD Q6Z9E8_ORYSJ/24-104 AVMADV.......LSKGREACYKARDAFYTCVEK...HADKKPTEI...........ATMGLLYPAD...............CKKSRANFVNSCRPSWVKHFDRQYSAKKRVQRLLD COA6_BOVIN/1-60 MAAPT.........MKERQACWGARDEYWKCLDE...NTE.......................DASK...............CKKLRSSFESSCPQQWIKYFDKRR.......DYLK A0A509AJC1_PLABA/28-89 PRFLQ.........MNQFNHCAYRYTMFCRCAKE...LGD.......................DDPR...............CKFQYYRAQIACTVEQLEEWDDQ.....RQKGTCV Q209Q4_9CHLO/74-135 VRFPN.........KNQARHCFVRFNEYYKCIHE...RGE.......................DHAR...............CQFYQSAYQSLCPSDWLENWTEL.....REQGLWI Q6KAE3_ORYSJ/22-83 WRFPS.........ANQTKRCFTCYIEYNKCIEA...KGE.......................GSDE...............CTKYAKCYRSLCPGEWIERWKEQ.....RANGTFA CX6B3_ARATH/14-75 FRFPT.........TNQTRHCFTRYIEFHRCTTA...KGE.......................DANE...............CERFAKYYRALCPGEWVDKWNEQ.....RETGTFP Q00TI2_OSTTA/35-96 ARFPQ.........TNQAKHCYTRYNEFHKCQAE...NGE.......................GAEE...............CEPLGKFYRAICPQEWVEKWNEQ.....REEGTWA Q7XY46_GRIJA/21-82 RRFPT.........QNQTKHCWARYLEFHACAKA...KGQ.......................DDPE...............CDKFKRWYISLCPIEWVEKWDTL.....KEEGRFP Q6XHZ3_DROYA/23-84 PRFPN.........QNVTRYCYQSYIDFHRCQKK...RGE.......................DFAP...............CNYFQKVYKSMCPNAWVEKWDDQ.....RESGTFP Q06DG6_ANOFN/12-73 PRFPN.........QNQTKYCYQSYLDFHRCEKV...KGQ.......................GDQV...............CKYFKGVFSSMCPNSWVEKWDTQ.....REEGTFA Q16XG7_AEDAE/22-83 PRFPN.........QNQTKYCYQSYLDFYRCEKI...KGE.......................GDSV...............CKYFKDVFTDICPSVWIEKWDNQ.....RAEGTFA Q16XG8_AEDAE/19-80 PRFPN.........TNQTKYCYQSYLDFHRCEKV...KGK.......................GDKV...............CQYFKHVYGDLCPNAWIEKWDNQ.....RGEGTFA Q9BL34_CAEEL/55-116 ARFPQ.........VRKQRQCFAYYVDFHRCNEL...MGQ.......................DYKP...............CKFFQNVYKDFCPGFWTERWDEL.....LSEGRFP #=GC SS_cons TTS-S.........SB-HHHHHHHHHHHHHHCCT...S-S.......................SCHC...............HHHHHHHHHHHS-HHHHHHHHHH.....HHTT--S #=GC seq_cons sphPs.........pspp+pCapshscaacClcp...ps........................spp................Cphhppsacs.CssuWlchac-p.....pcpshhs //