# STOCKHOLM 1.0 #=GF ID AtpR #=GF AC PF12966.10 #=GF DE N-ATPase, AtpR subunit #=GF AU Finn RD;0000-0001-8626-2148 #=GF GA 26.0 26.0 #=GF NC 25.9 25.9 #=GF TC 26.0 26.1 #=GF SE [1] #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF CL CL0478 #=GF RN [1] #=GF RM 20472544 #=GF RT Characterization of the N-ATPase, a distinct, laterally #=GF RT transferred Na+-translocating form of the bacterial F-type #=GF RT membrane ATPase. #=GF RA Dibrova DV, Galperin MY, Mulkidjanian AY; #=GF RL Bioinformatics. 2010; [Epub ahead of print] #=GF DR INTERPRO; IPR017581; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC Membrane protein with three predicted transmembrane segments, #=GF CC two of which contain conserved Arg residues. AtpR genes are #=GF CC found in the N-ATPase (archaeal-type F1-Fo-ATPase) operons and #=GF CC are predicted to interact with the conserved Glu/Asp residues in #=GF CC the c subunits, regulating the assembly and/or function of the #=GF CC membrane-embedded ring of 'c' (proteolipid) subunits #=GF CC (PFAM:PF00137). #=GF SQ 42 G4SY85.1/6-87 MLALAFGAGSLLGMFFFGGLWWTVQKGLQSKRPG..LWFFSSMLLRTG...ITLA.G.F.YW.L......AA.D.HWPRLLACLLGFVVARFIVVRLTR-- M1NCT0.1/8-89 TLLLALVAGVLLGVMFFGGLWWTVRKGLASKRPA..AWFLGSMLLRIG...LTVA.G.F.YF.V......GG.G.HWQRLLLCLLGFAMARFLVTRFTR-- A0A1G6S414.1/7-87 -MILVLLVGLALGTLFFGGLWFTVKKTINAKAPA..IWFISSFFLRVS...IVMI.G.F.YF.V......AQ.G.SWQRLIICLVGFIVARFVVTHITK-- A0A402CXZ0.1/9-87 ---AAGIAGGLLGAIFFGGLWWTVRKGIASERPA..FWFFGSLMTRMS...IALI.G.F.YF.V......SG.S.HWDRTLASLLGFVIARLIVSQRTK-- A8ZNS0.1/7-91 ALFTSLILGSSLGLLYFGGLWITILRFNRTTQPI..LLMWSSFLLRLG...TVLG.V.F.HL.Ilq.ngmSD.H.LLAPLLLTFLGFLGARNLLISS---- Q2LY39.1/7-89 SLVGVFAVGMVLGIVYFAILWQTVRRLPVASSPA..RLLMTSLLIRVG...IVLP.A.F.YL.I......MA.G.RWERIVVALGGFVVVREILIRFWGK- C0Q8V7.1/6-89 RYFLLFLTGSLAGLFYFGGLWLTLKQTLNRPRGA..VWIFISFILRTA...VVVT.L.F.VI.L......ME.N.DFYRILVLMAGFIWVRFLFTSRMKKP A0A369CGC1.1/6-93 SLALALMAGALLGTLFFGGLWWTVRKGVSSGHPA..AWFLGSLLLRTG...LVLA.G.F.YG.VagfygvAG.G.QGERMLSCLLGFLVARFLVMRFTG-- A0A518EVL7.1/8-86 TYALAGLVGWALGVFFFGGLWWTVRKLVASPAPA..RWMIASTLLRTG...TTLL.G.F.YL.V......SG.G.SWQRMLACLLGFLAGRLSVFW----- A0A2Z4FJW1.1/8-86 --FLAGLGGVALGGLFFGSLWWTVQKVTTSARPA..LWAVGSFVLRMV...VTVG.G.F.YL.V......GG.G.QWQRIVACLAGFLLARAVITRVT--- A0A5C6DKR9.1/9-91 SFVTPFLAGIFVGLFYHIGLWWTVKALPSSQRPA..LLSIGSFYIRMG...ITLS.V.F.YL.I......MS.N.SWQRLVVCLLGFLVVKYTMTRMLRP- A0A517QKA8.1/7-85 ELMLSLLAGGLLGLLFYGSLWLTIRQLPRTKQPA..LLFLGSFLVRMS...ITLF.G.F.WI.V......MA.G.QWERALACLFGFVISRILMTL----- A0A2S6NF29.1/7-82 -LAAATAAGLLLGAFFFGGLWWTVVRGLSSPRPA..LWFFCGLLLRMS...VTLA.G.F.YL.V......GR.D.NWKLWLACLLGFVLARLAA------- A0A091FER9.1/4-84 TLITAFIAGLFFGAFYFIALWQTVQRLPSAKSPA..RLMLTSFILRMA...VVLS.G.F.YL.V......MGgG.HWERLASAMLGFIIIRKILTYR---- A0A162MU60.1/6-85 ELAIALFGGFVLGLFYFYSLWITVRQLPVTAYPI..PLTLGSFIARLA...ITLL.G.F.YL.L......MN.G.HWQRGLIALVGFTIARTILTSI---- A0A1P8WLM4.1/8-85 -YGIMIVVGMVLGVIFFGGLWATVRKLPTSKRPG..LLAISSMILRTA...IVCW.G.V.WY.F......SN.G.DAGAMVACLLGFVGVRLLATH----- A0A1L3GQP4.1/10-86 --GMALAAGAALGAIFFAGLWLTVRRLPRVRSPY..RFYALSLLFRLT...LVLA.G.F.YL.L......AA.G.GTKDLLAAGAGFMLSRQLWLF----- D8FAG7.1/10-90 ---LAFLWGVLLGSLYFGGLWITLRKMPEKKKKK..RWLALSYILRLC...VALV.G.F.WIvI......EL.K.GPPAFFFTLAGFFLTRFVMTRFLSP- A0A5S9F5R2.1/3-77 -IAISLCCGILLGILHFGGLWWTIAFVTKHKNAH..VLLLSA-FVRMG...ITLS.G.F.YL.V......MS.G.RSERLLLCLLGFVLARYTL------- A0A4R1F4M7.1/20-101 -WLMAFLVGGFAGFVYFFGLWLTLKKLTISNNPA..LLMLSSLILRMA...FVMF.I.F.YL.I......MR.NiGWQGLLIALLGLIVVRFILTRKYK-- A0A4Y8I038.1/8-90 --LLYFFIGLGLGLFYFAGLWLTIKNMNNVRSPI..ILTLGSFIVRTA...AIFY.V.LiYV.A......RQ.G.EWTNILILLAGFIAGRIFLTRMIGKQ R5Q841.1/6-88 -TLFCFLAGSAVGVVYFGGLWQTIKMLKTTKHTT..RVLVVSWLVRNL...FFIG.S.F.FL.L......MQ.G.SAHRLIAAFLGMMAVRAAMTIYMKRK B6IQS2.1/15-94 AALAALAAGLAGGVIYFRALRLNARLWLAGRGVA..LPLLLH-AGRLL...LAGG.L.F.VL.A......AQ.A.GAAALLAGFAGFLAARRLTVRPG--- A0A401FX06.1/9-86 --LLAFLCGALLGTLHFGGLWLTILLMPACARPR..LCWYMSFLIRLC...MTLA.G.M.WI.V......LD.R.RPGAFIFTFGAFLSVRWLISRQ---- A0A317MX68.1/9-84 ---AIAGGGFVLGLLHFGGLWLSLRLLRQRTRPA..LWLLASSGLRIA...VSLG.G.L.WW.L......MA.G.APLRLLAALGGFILARWLLSQ----- S7TWP1.1/11-88 ---LAAMWGLGIGGFYFYGLWWTLAGLSKSTKPG..RWLAVSYMVRVS...VAML.G.F.WL.V......VR.N.DLICFFITLATFFLMRFILTRTL--- A0A2Z2NTX6.1/20-98 ---ICFLGGMILGYGYFRALQETTNLLVSQ-RPL..PWILGLTLMRMG...LLGA.G.F.YL.A......AQ.A.GAYALLAALAGVLLSKALLLRRINR- A0A317EG68.1/11-91 QVLAGLAAGVAFGLLYFKGLWWQVRRFEARR-RT..LALVGVMVLRFA...LLGG.G.L.LL.A......AL.A.GAVPLLSAAVGILAGRWLVMRQVR-- A0A0S2TFL6.1/7-88 ELMASAVAGVGLGLLFLWALWRSLRRLPERDRPG..LWMAGAMTLRIL...AVVA.VlF.AI.L......LW.G.DWRHVTAALVGFTLARWLVARRV--- I3TL53.1/13-92 ALALAFVAGLAAGAGFFLVLRRNTDLFAGG-RIG..LAIAMQ-VARFA...VLVP.V.L.VL.A......AR.Q.GAGPLLAAALGVLIARRVVVGRVR-- G7ZES4.1/14-91 -ILTGALAGLALGTLFFRGLAATARLYVAGG--I..RRAVPLYLLRLA...CATA.G.F.TI.A......AL.WgGAEALLAMLAGFQIARSLVVRR---- A0A168V0P1.1/10-94 TLTLALAGGAVAGALHAGLLWLSVNQLIHGGRIW..V-FAAGALGRLAlivVATA.W.F.LN.V......AD.G.RLTDLAVAVVGFVAARIAATRLVKR- A0A2C9D4C4.1/21-93 -----GVFGLLVGLAYFGSLTWTVDCFAEGR-AG..RALVLQ-LLRFL...LLAG.G.L.VL.M......AL.L.GATALISSAIGITVARMIVLRR---- A0A1T4SAZ2.1/8-86 -LLAWFIAGAILGTLHWMSLRWSIGLFAAGRSVL..LPFLTQ-LARFA...SIGA.A.L.TF.A.....aVH.Q.GAYALLASAGGVLAARAVALRR---- A0A366F4X1.1/6-82 -LAAAFLIGAALGAAHFLSLWWSVGL-MRDGRTG..LGVALQ-GLRFF...TLAA.A.L.VV.V......AK.L.GASLLLAAAAGVLVARLALTRH---- A0A2N8M7K4.1/57-129 ----------AFGLAYFTVLRWTVDLYCANYGGA..LAPVALTLGRIA...GAVI.F.L.AL.A......AT.V.GAEPLIGAFLGFLVARAIALRSVRS- A0A1Y6CQA3.1/8-86 AALPWLPLGGLVGWAFFASLRRVAELYLGGGGAG..RALALQ-LGRLA...LAGV.L.F.WL.A......AR.Q.GAAPLGALFLGFLLARLVIVRR---- A0A2G4YTW6.1/5-86 -IVLCIVAGIGLGASFYLALGLQDLLPLRRMSDW..IGLFLH-LMRFG...ITIW.V.F.WI.V......AG.I.GSFPLLGALAGFLSGRFLAMRFLRKK A0A127FE40.1/11-88 ---LGIVAGAVGGALFFTGLALGLHQALRSTRPG..VVLLVSAVLRIA...AMAAlG.W.LV.V......VR.A.GTVALLTFSLAFLVMRILAVAL---- A0A6N0DZ17.1/8-77 --ALFAAIGMALGAGFFALLHKEVGQFADGTPSG..KLVALH-LVRLV...GAAG.L.F.WI.I......AQ.Y.GAAALLASLAGFTLV----------- A0A397Q1M3.1/5-87 AIVIGLCAGVAAALVYLLMLWLSVAAAIRRRSAT..PLILGT-VARLG...LFVL.L.G.AV.Lw....wLR.P.EPTSLIAGALGFLVTRTVVIRRVP-- A0A1Y6K4C8.1/7-87 --IFWTLIGAITGYLYFLSQQWSVNQLDTQKRHRsiSLIMVGTILRWL...LVGI.V.F.SI.S......VS.H.SYLALLSVFLSFMLVRLVFLLMW--- //