# STOCKHOLM 1.0
#=GF ID AtpR
#=GF AC PF12966.10
#=GF DE N-ATPase, AtpR subunit 
#=GF AU Finn RD;0000-0001-8626-2148
#=GF GA 26.0 26.0
#=GF NC 25.9 25.9
#=GF TC 26.0 26.1
#=GF SE [1]
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF CL CL0478
#=GF RN [1]
#=GF RM 20472544
#=GF RT Characterization of the N-ATPase, a distinct, laterally
#=GF RT transferred Na+-translocating form of the bacterial F-type
#=GF RT membrane ATPase.
#=GF RA Dibrova DV, Galperin MY, Mulkidjanian AY;
#=GF RL Bioinformatics. 2010; [Epub ahead of print]
#=GF DR INTERPRO; IPR017581;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC Membrane protein with three predicted transmembrane segments,
#=GF CC two of which contain conserved Arg residues. AtpR genes are
#=GF CC found in the N-ATPase (archaeal-type F1-Fo-ATPase) operons and
#=GF CC are predicted to interact with the conserved Glu/Asp residues in
#=GF CC the c subunits, regulating the assembly and/or function of the
#=GF CC membrane-embedded ring of 'c' (proteolipid) subunits
#=GF CC (PFAM:PF00137).
#=GF SQ 42
G4SY85.1/6-87       MLALAFGAGSLLGMFFFGGLWWTVQKGLQSKRPG..LWFFSSMLLRTG...ITLA.G.F.YW.L......AA.D.HWPRLLACLLGFVVARFIVVRLTR--
M1NCT0.1/8-89       TLLLALVAGVLLGVMFFGGLWWTVRKGLASKRPA..AWFLGSMLLRIG...LTVA.G.F.YF.V......GG.G.HWQRLLLCLLGFAMARFLVTRFTR--
A0A1G6S414.1/7-87   -MILVLLVGLALGTLFFGGLWFTVKKTINAKAPA..IWFISSFFLRVS...IVMI.G.F.YF.V......AQ.G.SWQRLIICLVGFIVARFVVTHITK--
A0A402CXZ0.1/9-87   ---AAGIAGGLLGAIFFGGLWWTVRKGIASERPA..FWFFGSLMTRMS...IALI.G.F.YF.V......SG.S.HWDRTLASLLGFVIARLIVSQRTK--
A8ZNS0.1/7-91       ALFTSLILGSSLGLLYFGGLWITILRFNRTTQPI..LLMWSSFLLRLG...TVLG.V.F.HL.Ilq.ngmSD.H.LLAPLLLTFLGFLGARNLLISS----
Q2LY39.1/7-89       SLVGVFAVGMVLGIVYFAILWQTVRRLPVASSPA..RLLMTSLLIRVG...IVLP.A.F.YL.I......MA.G.RWERIVVALGGFVVVREILIRFWGK-
C0Q8V7.1/6-89       RYFLLFLTGSLAGLFYFGGLWLTLKQTLNRPRGA..VWIFISFILRTA...VVVT.L.F.VI.L......ME.N.DFYRILVLMAGFIWVRFLFTSRMKKP
A0A369CGC1.1/6-93   SLALALMAGALLGTLFFGGLWWTVRKGVSSGHPA..AWFLGSLLLRTG...LVLA.G.F.YG.VagfygvAG.G.QGERMLSCLLGFLVARFLVMRFTG--
A0A518EVL7.1/8-86   TYALAGLVGWALGVFFFGGLWWTVRKLVASPAPA..RWMIASTLLRTG...TTLL.G.F.YL.V......SG.G.SWQRMLACLLGFLAGRLSVFW-----
A0A2Z4FJW1.1/8-86   --FLAGLGGVALGGLFFGSLWWTVQKVTTSARPA..LWAVGSFVLRMV...VTVG.G.F.YL.V......GG.G.QWQRIVACLAGFLLARAVITRVT---
A0A5C6DKR9.1/9-91   SFVTPFLAGIFVGLFYHIGLWWTVKALPSSQRPA..LLSIGSFYIRMG...ITLS.V.F.YL.I......MS.N.SWQRLVVCLLGFLVVKYTMTRMLRP-
A0A517QKA8.1/7-85   ELMLSLLAGGLLGLLFYGSLWLTIRQLPRTKQPA..LLFLGSFLVRMS...ITLF.G.F.WI.V......MA.G.QWERALACLFGFVISRILMTL-----
A0A2S6NF29.1/7-82   -LAAATAAGLLLGAFFFGGLWWTVVRGLSSPRPA..LWFFCGLLLRMS...VTLA.G.F.YL.V......GR.D.NWKLWLACLLGFVLARLAA-------
A0A091FER9.1/4-84   TLITAFIAGLFFGAFYFIALWQTVQRLPSAKSPA..RLMLTSFILRMA...VVLS.G.F.YL.V......MGgG.HWERLASAMLGFIIIRKILTYR----
A0A162MU60.1/6-85   ELAIALFGGFVLGLFYFYSLWITVRQLPVTAYPI..PLTLGSFIARLA...ITLL.G.F.YL.L......MN.G.HWQRGLIALVGFTIARTILTSI----
A0A1P8WLM4.1/8-85   -YGIMIVVGMVLGVIFFGGLWATVRKLPTSKRPG..LLAISSMILRTA...IVCW.G.V.WY.F......SN.G.DAGAMVACLLGFVGVRLLATH-----
A0A1L3GQP4.1/10-86  --GMALAAGAALGAIFFAGLWLTVRRLPRVRSPY..RFYALSLLFRLT...LVLA.G.F.YL.L......AA.G.GTKDLLAAGAGFMLSRQLWLF-----
D8FAG7.1/10-90      ---LAFLWGVLLGSLYFGGLWITLRKMPEKKKKK..RWLALSYILRLC...VALV.G.F.WIvI......EL.K.GPPAFFFTLAGFFLTRFVMTRFLSP-
A0A5S9F5R2.1/3-77   -IAISLCCGILLGILHFGGLWWTIAFVTKHKNAH..VLLLSA-FVRMG...ITLS.G.F.YL.V......MS.G.RSERLLLCLLGFVLARYTL-------
A0A4R1F4M7.1/20-101 -WLMAFLVGGFAGFVYFFGLWLTLKKLTISNNPA..LLMLSSLILRMA...FVMF.I.F.YL.I......MR.NiGWQGLLIALLGLIVVRFILTRKYK--
A0A4Y8I038.1/8-90   --LLYFFIGLGLGLFYFAGLWLTIKNMNNVRSPI..ILTLGSFIVRTA...AIFY.V.LiYV.A......RQ.G.EWTNILILLAGFIAGRIFLTRMIGKQ
R5Q841.1/6-88       -TLFCFLAGSAVGVVYFGGLWQTIKMLKTTKHTT..RVLVVSWLVRNL...FFIG.S.F.FL.L......MQ.G.SAHRLIAAFLGMMAVRAAMTIYMKRK
B6IQS2.1/15-94      AALAALAAGLAGGVIYFRALRLNARLWLAGRGVA..LPLLLH-AGRLL...LAGG.L.F.VL.A......AQ.A.GAAALLAGFAGFLAARRLTVRPG---
A0A401FX06.1/9-86   --LLAFLCGALLGTLHFGGLWLTILLMPACARPR..LCWYMSFLIRLC...MTLA.G.M.WI.V......LD.R.RPGAFIFTFGAFLSVRWLISRQ----
A0A317MX68.1/9-84   ---AIAGGGFVLGLLHFGGLWLSLRLLRQRTRPA..LWLLASSGLRIA...VSLG.G.L.WW.L......MA.G.APLRLLAALGGFILARWLLSQ-----
S7TWP1.1/11-88      ---LAAMWGLGIGGFYFYGLWWTLAGLSKSTKPG..RWLAVSYMVRVS...VAML.G.F.WL.V......VR.N.DLICFFITLATFFLMRFILTRTL---
A0A2Z2NTX6.1/20-98  ---ICFLGGMILGYGYFRALQETTNLLVSQ-RPL..PWILGLTLMRMG...LLGA.G.F.YL.A......AQ.A.GAYALLAALAGVLLSKALLLRRINR-
A0A317EG68.1/11-91  QVLAGLAAGVAFGLLYFKGLWWQVRRFEARR-RT..LALVGVMVLRFA...LLGG.G.L.LL.A......AL.A.GAVPLLSAAVGILAGRWLVMRQVR--
A0A0S2TFL6.1/7-88   ELMASAVAGVGLGLLFLWALWRSLRRLPERDRPG..LWMAGAMTLRIL...AVVA.VlF.AI.L......LW.G.DWRHVTAALVGFTLARWLVARRV---
I3TL53.1/13-92      ALALAFVAGLAAGAGFFLVLRRNTDLFAGG-RIG..LAIAMQ-VARFA...VLVP.V.L.VL.A......AR.Q.GAGPLLAAALGVLIARRVVVGRVR--
G7ZES4.1/14-91      -ILTGALAGLALGTLFFRGLAATARLYVAGG--I..RRAVPLYLLRLA...CATA.G.F.TI.A......AL.WgGAEALLAMLAGFQIARSLVVRR----
A0A168V0P1.1/10-94  TLTLALAGGAVAGALHAGLLWLSVNQLIHGGRIW..V-FAAGALGRLAlivVATA.W.F.LN.V......AD.G.RLTDLAVAVVGFVAARIAATRLVKR-
A0A2C9D4C4.1/21-93  -----GVFGLLVGLAYFGSLTWTVDCFAEGR-AG..RALVLQ-LLRFL...LLAG.G.L.VL.M......AL.L.GATALISSAIGITVARMIVLRR----
A0A1T4SAZ2.1/8-86   -LLAWFIAGAILGTLHWMSLRWSIGLFAAGRSVL..LPFLTQ-LARFA...SIGA.A.L.TF.A.....aVH.Q.GAYALLASAGGVLAARAVALRR----
A0A366F4X1.1/6-82   -LAAAFLIGAALGAAHFLSLWWSVGL-MRDGRTG..LGVALQ-GLRFF...TLAA.A.L.VV.V......AK.L.GASLLLAAAAGVLVARLALTRH----
A0A2N8M7K4.1/57-129 ----------AFGLAYFTVLRWTVDLYCANYGGA..LAPVALTLGRIA...GAVI.F.L.AL.A......AT.V.GAEPLIGAFLGFLVARAIALRSVRS-
A0A1Y6CQA3.1/8-86   AALPWLPLGGLVGWAFFASLRRVAELYLGGGGAG..RALALQ-LGRLA...LAGV.L.F.WL.A......AR.Q.GAAPLGALFLGFLLARLVIVRR----
A0A2G4YTW6.1/5-86   -IVLCIVAGIGLGASFYLALGLQDLLPLRRMSDW..IGLFLH-LMRFG...ITIW.V.F.WI.V......AG.I.GSFPLLGALAGFLSGRFLAMRFLRKK
A0A127FE40.1/11-88  ---LGIVAGAVGGALFFTGLALGLHQALRSTRPG..VVLLVSAVLRIA...AMAAlG.W.LV.V......VR.A.GTVALLTFSLAFLVMRILAVAL----
A0A6N0DZ17.1/8-77   --ALFAAIGMALGAGFFALLHKEVGQFADGTPSG..KLVALH-LVRLV...GAAG.L.F.WI.I......AQ.Y.GAAALLASLAGFTLV-----------
A0A397Q1M3.1/5-87   AIVIGLCAGVAAALVYLLMLWLSVAAAIRRRSAT..PLILGT-VARLG...LFVL.L.G.AV.Lw....wLR.P.EPTSLIAGALGFLVTRTVVIRRVP--
A0A1Y6K4C8.1/7-87   --IFWTLIGAITGYLYFLSQQWSVNQLDTQKRHRsiSLIMVGTILRWL...LVGI.V.F.SI.S......VS.H.SYLALLSVFLSFMLVRLVFLLMW---
//