# STOCKHOLM 1.0
#=GF ID   AtpR
#=GF AC   PF12966.10
#=GF DE   N-ATPase, AtpR subunit 
#=GF AU   Dibrova DV;
#=GF AU   Galperin MY;0000-0002-2265-5572
#=GF AU   Mulkidjanian AY;0000-0001-5844-3064
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   [1]
#=GF GA   26.00 26.00;
#=GF TC   26.00 26.10;
#=GF NC   25.90 25.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0478
#=GF RN   [1]
#=GF RM   20472544
#=GF RT   Characterization of the N-ATPase, a distinct, laterally
#=GF RT   transferred Na+-translocating form of the bacterial F-type
#=GF RT   membrane ATPase.
#=GF RA   Dibrova DV, Galperin MY, Mulkidjanian AY;
#=GF RL   Bioinformatics. 2010; [Epub ahead of print]
#=GF DR   INTERPRO; IPR017581;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Membrane protein with three predicted transmembrane segments,
#=GF CC   two of which contain conserved Arg residues. AtpR genes are
#=GF CC   found in the N-ATPase (archaeal-type F1-Fo-ATPase) operons and
#=GF CC   are predicted to interact with the conserved Glu/Asp residues in
#=GF CC   the c subunits, regulating the assembly and/or function of the
#=GF CC   membrane-embedded ring of 'c' (proteolipid) subunits
#=GF CC   (PFAM:PF00137).
#=GF SQ   19
#=GS C6BWL1_DESAD/7-101   AC C6BWL1.1
#=GS B2IHN9_BEII9/16-100  AC B2IHN9.1
#=GS B6IQS2_RHOCS/14-98   AC B6IQS2.1
#=GS B2JH77_PARP8/14-97   AC B2JH77.1
#=GS Q63IW6_BURPS/13-91   AC Q63IW6.1
#=GS Q5FNZ0_GLUOX/7-91    AC Q5FNZ0.1
#=GS Q3A080_PELCD/7-91    AC Q3A080.1
#=GS Q2LY39_SYNAS/6-91    AC Q2LY39.1
#=GS B1WXB5_CROS5/7-92    AC B1WXB5.1
#=GS C0QS20_PERMH/4-84    AC C0QS20.1
#=GS C0Q8V7_DESAH/5-90    AC C0Q8V7.1
#=GS C7LQ38_DESBD/5-90    AC C7LQ38.1
#=GS Q8TN55_METAC/5-90    AC Q8TN55.1
#=GS A1VPR2_POLNA/7-92    AC A1VPR2.1
#=GS Q21ZA3_RHOFT/5-90    AC Q21ZA3.1
#=GS A1SS58_PSYIN/13-98   AC A1SS58.1
#=GS Q2Y8G5_NITMU/5-101   AC Q2Y8G5.1
#=GS Q07YM4_SHEFN/11-99   AC Q07YM4.1
#=GS A8ZNS0_ACAM1/6-103   AC A8ZNS0.1
C6BWL1_DESAD/7-101              MITVAAFGIGLLLSAIHFGGLWLTVRMLPRCERPRMFFWSSYLGRYGITLWGFAQ...V.....MSYGGGPFVSSFLGFYLLRTYLLANQCGMGMLDVVKMK........R
B2IHN9_BEII9/16-100             LVLGAHLFGGFLLGVIYFRALWWNTRLLAQGRRPLLAISIA.LARFVLLGGLLIL...A.....SREGVAPLLATVFGLFVGRFLVLR......G...VWAK........I
B6IQS2_RHOCS/14-98              LAALAALAAGLAGGVIYFRALRLNARLWLAGRGVALPLLLH.AGRLLLAGGLFVL...A.....AQAGAAALLAGFAGFLAARRLTVR......P...GTAE........P
B2JH77_PARP8/14-97              AVFVAGFAVGLLVGAAHFASLRWNAALFVAGC.PVRALALQ.LSRFALTAAVFIV...L.....AKVGVLALLGGTGGIMWTRSIALT......L...GRAE........P
Q63IW6_BURPS/13-91              .AAAIGLALGFAAGACHFVSLGWNSRLFVAGR.AGVALALQ.FARVALAVAVLVV...L.....ARAGFGMLVAGSAGFFAARAIAVR......R...A............
Q5FNZ0_GLUOX/7-91               FTSLGWLLVGLLAGSVHVAALWVNVQFLMTHSRRPVAIAML.LGRFLLLGGLLYL...A.....ARSGTASFLWATCGVLVARPLVLR......I...MKAR........I
Q3A080_PELCD/7-91               GRMALALLTGLLLGAGYFGGLYLTVKSLKRCASPRLLLTASFLIRLLVVLGVFYL...L.....SDWGALVMLTAMGGFLIARLGWLR..........SRYG........R
Q2LY39_SYNAS/6-91               LSLVGVFAVGMVLGIVYFAILWQTVRRLPVASSPARLLMTSLLIRVGIVLPAFYL...I.....MAGRWERIVVALGGFVVVREILIR......F...WGKG........E
B1WXB5_CROS5/7-92               LENLIPFIFGIILGTFYFSSLWITVRQLPTTVYPVRLFIGSFLGRIFVTLFGFYL...I.....MDGQWQRILICLGGFILARIVLTN......V...LKPE........L
C0QS20_PERMH/4-84               IVYALLFFLGYLCGILFFNHLFKSSKEAILKKKRSTGFFRRFIPFSVVAVAVAYF...F.........KIGILFFLLGFYLSRLTFTR..........LLTD........L
C0Q8V7_DESAH/5-90               LRYFLLFLTGSLAGLFYFGGLWLTLKQTLNRPRGAVWIFISFILRTAVVVTLFVI...L.....MENDFYRILVLMAGFIWVRFLFTS......R...MKKP........K
C7LQ38_DESBD/5-90               LTLVLALAAGVLLGGLFFGGLWWTVRKGVSSKRPAFWFFASLLLRMGITLTGFHF...I.....AGGHLGRLLMCLLGFFIARLVVTR......L...TRTV........E
Q8TN55_METAC/5-90               FNLISALVAGFLLGAFFFGGLWWTVRKGLLSGQPALWFFGSLLLRTGIAVAGFYF...A.....SGGHWDRLLMCLLGFFIMRRIVTR......L...TRAP........E
A1VPR2_POLNA/7-92               PALVLACIAGGALGAIFFGGLWWTVRKSLVSSRPALWVFASLLLRMGLTMAGFYV...V.....SGGDWRRLLACLAGFVMARQVVTR......L...TRPL........D
Q21ZA3_RHOFT/5-90               LTLALAWVAGGVLGTIFFGGLWWTVRKGVSSKQPALWLFSSLLLRIGIALAGFYF...V.....SGGHWERLLACLLGFVVARLVVTW......M...TRSS........G
A1SS58_PSYIN/13-98              LPLLPLLLAGAVLGVIFFAGLCWTVQRGIKSAHPGRWFFGSFLLRTAVALSGIYL...L.....TDGQWPKLLACMLGFIGARIVVIT......I...TGSA........T
Q2Y8G5_NITMU/5-101              MSLLLALVGGVLLGAFFFGGLWWTVRRSIASPRPGTWFVGSMLLRTCIVTAGFYFLLEL.....AAPGKKILFAAVVGFIIARVVATQ......F...LPTPLSPSLVRMG
Q07YM4_SHEFN/11-99              VELTLALLAGALLGVFFFAGLWWTVRQLKSTQHVALLFIASLLFRSAIVIAGFYF...I.....AGDNGYHLLAGLLGFMLVRLMATR......YTLQVEQA........Q
A8ZNS0_ACAM1/6-103              PALFTSLILGSSLGLLYFGGLWITILRFNRTTQPILLMWSSFLLRLGTVLGVFHL...ILQNGMSDHLLAPLLLTFLGFLGARNLLISSI..IPLPKKIKKG........R
#=GC seq_cons                   hshhhuhhsGhlLGshaFuuLWhTVRphhssppPuhhhhsShLhRhulslusFal...l.....ussthttLLsshhGFhluRhlshp......h...scst........t
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