# STOCKHOLM 1.0 #=GF ID AtpR #=GF AC PF12966.10 #=GF DE N-ATPase, AtpR subunit #=GF AU Dibrova DV; #=GF AU Galperin MY;0000-0002-2265-5572 #=GF AU Mulkidjanian AY;0000-0001-5844-3064 #=GF AU Finn RD;0000-0001-8626-2148 #=GF SE [1] #=GF GA 26.00 26.00; #=GF TC 26.00 26.10; #=GF NC 25.90 25.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF CL CL0478 #=GF RN [1] #=GF RM 20472544 #=GF RT Characterization of the N-ATPase, a distinct, laterally #=GF RT transferred Na+-translocating form of the bacterial F-type #=GF RT membrane ATPase. #=GF RA Dibrova DV, Galperin MY, Mulkidjanian AY; #=GF RL Bioinformatics. 2010; [Epub ahead of print] #=GF DR INTERPRO; IPR017581; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC Membrane protein with three predicted transmembrane segments, #=GF CC two of which contain conserved Arg residues. AtpR genes are #=GF CC found in the N-ATPase (archaeal-type F1-Fo-ATPase) operons and #=GF CC are predicted to interact with the conserved Glu/Asp residues in #=GF CC the c subunits, regulating the assembly and/or function of the #=GF CC membrane-embedded ring of 'c' (proteolipid) subunits #=GF CC (PFAM:PF00137). #=GF SQ 19 #=GS C6BWL1_DESAD/7-101 AC C6BWL1.1 #=GS B2IHN9_BEII9/16-100 AC B2IHN9.1 #=GS B6IQS2_RHOCS/14-98 AC B6IQS2.1 #=GS B2JH77_PARP8/14-97 AC B2JH77.1 #=GS Q63IW6_BURPS/13-91 AC Q63IW6.1 #=GS Q5FNZ0_GLUOX/7-91 AC Q5FNZ0.1 #=GS Q3A080_PELCD/7-91 AC Q3A080.1 #=GS Q2LY39_SYNAS/6-91 AC Q2LY39.1 #=GS B1WXB5_CROS5/7-92 AC B1WXB5.1 #=GS C0QS20_PERMH/4-84 AC C0QS20.1 #=GS C0Q8V7_DESAH/5-90 AC C0Q8V7.1 #=GS C7LQ38_DESBD/5-90 AC C7LQ38.1 #=GS Q8TN55_METAC/5-90 AC Q8TN55.1 #=GS A1VPR2_POLNA/7-92 AC A1VPR2.1 #=GS Q21ZA3_RHOFT/5-90 AC Q21ZA3.1 #=GS A1SS58_PSYIN/13-98 AC A1SS58.1 #=GS Q2Y8G5_NITMU/5-101 AC Q2Y8G5.1 #=GS Q07YM4_SHEFN/11-99 AC Q07YM4.1 #=GS A8ZNS0_ACAM1/6-103 AC A8ZNS0.1 C6BWL1_DESAD/7-101 MITVAAFGIGLLLSAIHFGGLWLTVRMLPRCERPRMFFWSSYLGRYGITLWGFAQ...V.....MSYGGGPFVSSFLGFYLLRTYLLANQCGMGMLDVVKMK........R B2IHN9_BEII9/16-100 LVLGAHLFGGFLLGVIYFRALWWNTRLLAQGRRPLLAISIA.LARFVLLGGLLIL...A.....SREGVAPLLATVFGLFVGRFLVLR......G...VWAK........I B6IQS2_RHOCS/14-98 LAALAALAAGLAGGVIYFRALRLNARLWLAGRGVALPLLLH.AGRLLLAGGLFVL...A.....AQAGAAALLAGFAGFLAARRLTVR......P...GTAE........P B2JH77_PARP8/14-97 AVFVAGFAVGLLVGAAHFASLRWNAALFVAGC.PVRALALQ.LSRFALTAAVFIV...L.....AKVGVLALLGGTGGIMWTRSIALT......L...GRAE........P Q63IW6_BURPS/13-91 .AAAIGLALGFAAGACHFVSLGWNSRLFVAGR.AGVALALQ.FARVALAVAVLVV...L.....ARAGFGMLVAGSAGFFAARAIAVR......R...A............ Q5FNZ0_GLUOX/7-91 FTSLGWLLVGLLAGSVHVAALWVNVQFLMTHSRRPVAIAML.LGRFLLLGGLLYL...A.....ARSGTASFLWATCGVLVARPLVLR......I...MKAR........I Q3A080_PELCD/7-91 GRMALALLTGLLLGAGYFGGLYLTVKSLKRCASPRLLLTASFLIRLLVVLGVFYL...L.....SDWGALVMLTAMGGFLIARLGWLR..........SRYG........R Q2LY39_SYNAS/6-91 LSLVGVFAVGMVLGIVYFAILWQTVRRLPVASSPARLLMTSLLIRVGIVLPAFYL...I.....MAGRWERIVVALGGFVVVREILIR......F...WGKG........E B1WXB5_CROS5/7-92 LENLIPFIFGIILGTFYFSSLWITVRQLPTTVYPVRLFIGSFLGRIFVTLFGFYL...I.....MDGQWQRILICLGGFILARIVLTN......V...LKPE........L C0QS20_PERMH/4-84 IVYALLFFLGYLCGILFFNHLFKSSKEAILKKKRSTGFFRRFIPFSVVAVAVAYF...F.........KIGILFFLLGFYLSRLTFTR..........LLTD........L C0Q8V7_DESAH/5-90 LRYFLLFLTGSLAGLFYFGGLWLTLKQTLNRPRGAVWIFISFILRTAVVVTLFVI...L.....MENDFYRILVLMAGFIWVRFLFTS......R...MKKP........K C7LQ38_DESBD/5-90 LTLVLALAAGVLLGGLFFGGLWWTVRKGVSSKRPAFWFFASLLLRMGITLTGFHF...I.....AGGHLGRLLMCLLGFFIARLVVTR......L...TRTV........E Q8TN55_METAC/5-90 FNLISALVAGFLLGAFFFGGLWWTVRKGLLSGQPALWFFGSLLLRTGIAVAGFYF...A.....SGGHWDRLLMCLLGFFIMRRIVTR......L...TRAP........E A1VPR2_POLNA/7-92 PALVLACIAGGALGAIFFGGLWWTVRKSLVSSRPALWVFASLLLRMGLTMAGFYV...V.....SGGDWRRLLACLAGFVMARQVVTR......L...TRPL........D Q21ZA3_RHOFT/5-90 LTLALAWVAGGVLGTIFFGGLWWTVRKGVSSKQPALWLFSSLLLRIGIALAGFYF...V.....SGGHWERLLACLLGFVVARLVVTW......M...TRSS........G A1SS58_PSYIN/13-98 LPLLPLLLAGAVLGVIFFAGLCWTVQRGIKSAHPGRWFFGSFLLRTAVALSGIYL...L.....TDGQWPKLLACMLGFIGARIVVIT......I...TGSA........T Q2Y8G5_NITMU/5-101 MSLLLALVGGVLLGAFFFGGLWWTVRRSIASPRPGTWFVGSMLLRTCIVTAGFYFLLEL.....AAPGKKILFAAVVGFIIARVVATQ......F...LPTPLSPSLVRMG Q07YM4_SHEFN/11-99 VELTLALLAGALLGVFFFAGLWWTVRQLKSTQHVALLFIASLLFRSAIVIAGFYF...I.....AGDNGYHLLAGLLGFMLVRLMATR......YTLQVEQA........Q A8ZNS0_ACAM1/6-103 PALFTSLILGSSLGLLYFGGLWITILRFNRTTQPILLMWSSFLLRLGTVLGVFHL...ILQNGMSDHLLAPLLLTFLGFLGARNLLISSI..IPLPKKIKKG........R #=GC seq_cons hshhhuhhsGhlLGshaFuuLWhTVRphhssppPuhhhhsShLhRhulslusFal...l.....ussthttLLsshhGFhluRhlshp......h...scst........t //