# STOCKHOLM 1.0
#=GF ID PELOTA_1
#=GF AC PF15608.9
#=GF DE PELOTA RNA binding domain
#=GF AU Anantharaman V;0000-0001-8395-0009
#=GF GA 25.0 25.0
#=GF NC 24.9 24.8
#=GF TC 25.0 25.0
#=GF SE Anantharaman V
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF CL CL0101
#=GF RN [1]
#=GF RM 11917006
#=GF RT Comparative genomics and evolution of proteins involved in RNA
#=GF RT metabolism.
#=GF RA Anantharaman V, Koonin EV, Aravind L;
#=GF RL Nucleic Acids Res. 2002;30:1427-1464.
#=GF RN [2]
#=GF RM 23044854
#=GF RT Ter-dependent stress response systems: novel pathways related to
#=GF RT metal sensing, production of a nucleoside-like metabolite, and
#=GF RT DNA-processing.
#=GF RA Anantharaman V, Iyer LM, Aravind L;
#=GF RL Mol Biosyst. 2012;8:3142-3165.
#=GF DR INTERPRO; IPR028157;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC This RNA binding Pelota domain [1] is at the C-terminus of a
#=GF CC PRTase family [2]. These PRTase+Pelota genes are found in the
#=GF CC biosynthetic  operon associated with the Ter stress-response
#=GF CC operon and are  predicted to be involved in the biosynthesis of
#=GF CC a ribo-nucleoside  involved in stress response [2]. 
#=GF SQ 48
A0A151APP3.1/285-364 -TGIRDVNEIKEKYGIDDINLIKPGVGETTRVLLRR..VPWRILVDD..INN....PNLKHILILAQDRKVPVEVY..KDM..KYSCCGIIKP
A0A143QE51.1/287-367 WSGWHSVEQVRERYGIASVNFVKPGVGETTRVLLRR..VPWRVLVRD..ADA....PEHQHIRLLADARGVPVDVV..PDL..AYSCVGLIKE
A8MM96.1/748-828     WQGLEDIRRIQKDFAIEDINLIKPGIGETTRVLLRR..VPWKILVRD..YDN....PNLRHILLLAKDRNVEVEVY..PQM..TYGCCGLIKP
A0A0D8HU54.1/287-366 WAGWESVEKVQAEYGISTVNFVKPGVGETTRVLLRR..LPWKVLVRQ..RAA....PEHAHIRLLAEARGVPVEEV..PDL..AYSCVGLIK-
Q9KY28.1/743-823     WEGWAAVERISEEYGIHDVNLVKPGVGETTRVMLRR..VPWKVLART..GAG....ADLDHVRLLAEQRGVPVEEV..ADL..PYTCVGLIHP
F2JGK7.1/291-368     --AAQSVENIRQCFDISSINRVKPGVGETTRVLLRR..VPWKILVKD..KED....KRIKHILLLARDRGVPVEVY..QDM..CYSCCGLIK-
A0A2X4UG85.1/286-365 WAGWESVERIRVRYGISSINFVKPGVGETTRVLLRR..VPWKVLVRD..LTA....DEHAHIRMLAAARDVPVEEI..PDL..AYSCMGLIK-
A0A0F4KA50.1/716-796 WKGWAAVERISEEYGIHDVNLVKPGVGETTRVLLRR..VPWKILADR..TAG....ADLDHVRLLAGQRGVPVEEV..EGL..PYSCVGLIHP
A0A1M5CE71.1/696-776 WAGWAEIERISAEYGIGDVTLVKPGVGETTRVLLRR..VPWAVLVRA..GAA....EDLAHVLLLAEQRGVPVHEV..PGL..TYRCVGLIHP
A0A3G8ZI61.1/293-372 WAGWAAVDKIRADYGIESVNFVKPGVGETTRVLLRR..VPWRILVRV..AKA....LDHEHIRLLAAARGVPVEVI..PDL..PYACVGLIR-
A0A087MZZ2.1/279-359 WAGMRDIITIQEHYGIADHNLVKPGVGETTRVLLRR..MPWKILVKD..MND....PSLTHIFQLAKERGVTVEPY..QAM..NYACCGLIRP
F8AVP2.1/278-358     WAGWQAVETLAKEYGIDNIGLVKPGVGETTRVLLRR..VPWKVVVTP..ERL....AELPHVLSLCEAKGVPVEER..ADL..PYSCVGIIKP
A6WD80.1/288-371     -TGWAEVERVSEHYDIGDVNLVKPGVGETTRVLLRR..VPWRVLVRP..EAElrhpDDLAHVRLLAAQRGVVVEEV..PGL..SYSAIGLIHP
A0A2P4UGX6.1/294-376 WSGWAAVRRIAAEYDVTDLNLVKPGVGETTRVLLRR..VPWKVLARA..DAG....AELAHIRLLADERGVPVVEVppDAL..PYACAGLIHP
A0A1J7BIP0.1/781-863 WAGWAAVERLGAAYGIGDVNLIKPGVGETTRVLLRR..VPWRVLVRR..GAG....ADLDHVRLLAEQRGVPVEEVddDDL..PYASVGLIHP
R7IPS7.1/265-345     --GMDEVIEIAKHFDIGDINLIKPGVGEATRVLLRR..VPWKILIDEryQED....AQLGHLLRLAEEKEVPVEIY..PLL..HYKCCGIIKK
G4E8B9.1/280-357     --SQAYMKAAMAHYGISDANLIKPGIGEATRVLLRR..MPQCVIVRN..THD....RKVAHLLALAADKGVPVEMT..PSL..PYNAVSIIR-
N2ADT9.1/270-350     --GMEEVKEIAQALQISDVHFIKPGIGETTRVLLRR..VPWKILVDArrKED....PALRHIFRLAQEKQVPVAYY..PLR..HYKCCGIIKK
A0A143ZRW7.1/264-345 -SGLEEAQDIADHFGVSNINFVKPGIGEATRVLLRR..LPWKVLVRE..GEEr..sGELKHLYQLAREKGVEVESY..PLQ..NYKACGIIKQ
A0A0D0SHK4.1/47-127  --GIDEVKNLAKHFAIDDINFIKPGIGEATRVLLRR..LPWKVLISP..EYKe..sLELRHLIRLAKEKDVPIEYY..PLN..HYKCCGIIKQ
A0A0L6JX44.1/301-381 WIGMKDVEDVGKLYSIDDINHIKPGIGETIRVLLRR..VPWKVLVKD..IND....KSLCNVLQLAREKNVEVEQY..DLK..SYKCIGLIKQ
A0A1I0YBN6.1/272-353 -TGKDEVAEIAAHFEISDINLVKPGIGEATRVLLRR..VPWKVLVKEgsEKD....DKIAHLLKLAKEKDVEVISY..PLR..HYIACGLIRQ
Q2RVZ5.1/282-359     --STAFVEAMMQRTGITDRNRVKPGIGEATRALLRR..MPERLFLRD..PQD....GDVGHLVALASSKGIAVETL..ADL..PYSACAIIK-
D3RPA4.1/287-364     --STALLADIRATFGIQNENFIKPGIGEATRVLLRR..VPERVIIRD..PEA....PEVAHLLELAHEKNVRRQVD..PTL..PYQAVSLIK-
A0A7X6H471.1/154-234 WGGWETAERIAAVYGMPSPGLVKPGVGETTRVLLRR..VPWQVLVNP..EAT....ADLDHVLLLARQRGVPVVPV..PGL..EYSCVGLIRP
S0IU22.1/274-355     -AGLREVRAIGRKFGISDLNLIKPGIGETTRVLLRR..IPWKILISSqcRKD....RSLNHIVRLAEEKQVPVEYY..PLV..RYKSCGIIKK
A0A4Q2A1N7.1/741-820 WLGVEDVNRIMDDFGIDNVHFVKPGVGETTRVLLRR..IPWKILINE..K-A....RGIDHIIQLAREKGIAVETY..PLK..AYNCCGIVKS
A0A1Q2SMX1.1/289-363 -----YFDRWIKQYGIRSIHHIKPGIAEATRVMLRR..VPERLLLRD..LES....DDLAHLLMLAKEKEIAIEHQ..PNM..PFSAVAFIK-
A0A1S1V498.1/394-471 --GRKEIESLMEEFGIEDINMVKPGTGDSTRVLLRR..VPWKILIKK..D-S....KNIDHIVQLAKERNVELENY..PLK..AYDCCGIVKN
R5L8F2.1/642-719     --GLAETREIAEKFGVPDIKLVKPGIGETTRVLLRR..IPELILLRD..PDS....PLTRHISELAREKGVEVRRY..PLK..CYEACGIIR-
J0L705.1/270-347     ---KKRIDELMKKYDVSNYNFLKPGVAETTRVLLRR..VPKKILLQN..LEN....WDTKHLIQLSNEKNIPVDEV..ADL..PFSAIGIVKN
A4BT04.1/291-368     --SRAWVACWMARYGVKDVNYIKPGIAEATRVMLRR..VPGRLLLRD..PTS....SDVEHLRVLAEEKSIPIDIE..PEM..PFNAAAFIK-
W6M7K4.1/281-357     ---VAFLKQVHARYRIGDRNFIKPGVAEATRVLLRR..LPDLLLLRD..PDQ....PDVAHLRLLAAQKGVTVVVD..PHI..PIQATALIR-
S6GGV1.1/258-333     ----DYVAALMTKQQIDDINKVKPGIAEATRVMLRR..VPKLLMVRD..INS....PDIAHLKVLAKEKNIHIEED..SLM..PFNAIAVIA-
A0A1I0EN86.1/281-358 ----NVIFRLKKMYQVDKINRIKPGIAEATRAVLRR..VPDHVIVRD..KTD....PDVSLLLHLAKQKNIIVTEM..QDAisPYRAITIIK-
Q6FAX7.1/298-379     -QSQQVVHKLAQEYDIQNINRIKPSIAEATRAILRR..VPDLVLLRD..ADD....EDTRLLRHLTQITKTPVQVV..GDQiaPYRAITLIQK
U5NAN4.1/290-359     ----------MARYGILDRNLIKPGIGEVTRVLLRR..LPQRMIVRD..RNA....ACVQHLLVLAEEKNVPVDER..PSL..PFHALAIIR-
A0A1Y0I2I6.1/281-356 ----NYVARVMREHQVGDINKVKPGIAEATRVMLRR..IPRLLIVKN..KDS....ADVAHLLELALEKQVPVLED..ATM..PLNATALIA-
A0A0M5X0F5.1/277-357 --SRDVIAFLADEFKVDSVNRIKPGIAEATRAVLRR..VPDHVFVRS..IDD....PDVALLVGLAREKGIVVTEM..GGTlgQYRAVTIIKK
A0A1V4I6P5.1/289-365 --AREDLIDIQKRFGVDSIRKIKAGIGETTRVLLRK..IPYKILVSD..INN....PNVKYVLLLAKDRGIPIEIY..KDM..NYLCCALV--
Q9RSA8.1/270-348     -QPVRAVLARAAELGVTDPHLVKPSVGEATRVFLRR..QPAHLLLRD..AAH....PDTLHLRELAAASGTPVTMH..PDL..PYLAAAIIA-
H6SKG0.1/286-349     ----------------RDRLLIKPGIGEATRALLRR..VPERLLVQD..PAL....PDTRHLIALAEAQGVAVEVE..KAM..PYRACVFVK-
A0A1H4BZ45.1/274-355 -QSQTIIAQLLENYEITNLNRLKPGIAEATRAVMRR..VPEHILVQR..LDD....PNIRLLRHLAESRGIPLQAV..GDGlaPYRAITIIKK
A0A2Z2NUE5.1/285-364 --ALASVRAIAQLYKVDNLNRIKPGIAEATRAVLRR..KPQKAFVRS..FDD....PDLEALIHLCRTDGVDLVED..AALtgPYRAITLIE-
Q4FTP9.1/312-391     ---ADLIDTLAAEYNITNRNRIKPTIAEATRAILRR..DPECILLAS..AEH....PDTILLRHLCAQRHIPIRVL..GDKilPYQAITLIKQ
A0A4Q2YBA3.1/283-360 ---EQCLHQMLARHGMTDRNRIKLGIGETVRVLLRR..KPEVVWLSP..AAN...pTDAGLIHRLAGLRQVPVRTD..AEL..TFDAVAVIA-
A0A172Q0S8.1/279-355 ----FVIDHVTETYNVQDELKIKPTISECTRALLRR..KPRLIICSG..SSA....SVYHFMKSLADPLEVEIEID..SNI.sPYQAIAILR-
A0A251XAD1.1/281-356 --SQTFMDEMIKTYRLASLRQFKPGLGESTRLLLQGngQASELLVRN..RRA....SDIEGLLLLANEQGIPVTEM..SSM..PYKAA-----
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