# STOCKHOLM 1.0 #=GF ID PELOTA_1 #=GF AC PF15608.9 #=GF DE PELOTA RNA binding domain #=GF AU Anantharaman V;0000-0001-8395-0009 #=GF SE Anantharaman V #=GF GA 25.00 25.00; #=GF TC 25.00 25.00; #=GF NC 24.90 24.80; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CL CL0101 #=GF RN [1] #=GF RM 11917006 #=GF RT Comparative genomics and evolution of proteins involved in RNA #=GF RT metabolism. #=GF RA Anantharaman V, Koonin EV, Aravind L; #=GF RL Nucleic Acids Res. 2002;30:1427-1464. #=GF RN [2] #=GF RM 23044854 #=GF RT Ter-dependent stress response systems: novel pathways related to #=GF RT metal sensing, production of a nucleoside-like metabolite, and #=GF RT DNA-processing. #=GF RA Anantharaman V, Iyer LM, Aravind L; #=GF RL Mol Biosyst. 2012;8:3142-3165. #=GF DR INTERPRO; IPR028157; #=GF DR SO; 0000417; polypeptide_domain; #=GF CC This RNA binding Pelota domain [1] is at the C-terminus of a #=GF CC PRTase family [2]. These PRTase+Pelota genes are found in the #=GF CC biosynthetic operon associated with the Ter stress-response #=GF CC operon and are predicted to be involved in the biosynthesis of #=GF CC a ribo-nucleoside involved in stress response [2]. #=GF SQ 36 #=GS Q186J5_CLOD6/281-358 AC Q186J5.1 #=GS R5XB52_9CLOT/301-379 AC R5XB52.1 #=GS F4EXE7_SELS3/265-346 AC F4EXE7.1 #=GS R5BVZ9_9FIRM/264-345 AC R5BVZ9.1 #=GS Q891X7_CLOTE/298-378 AC Q891X7.1 #=GS C0Z9Y7_BREBN/295-375 AC C0Z9Y7.1 #=GS E3EE68_PAEPS/297-377 AC E3EE68.1 #=GS M1FGD7_9ALTE/290-371 AC M1FGD7.1 #=GS STIP_ACIAD/297-379 AC Q6FAX7.1 #=GS D3VJW4_XENNA/275-357 AC D3VJW4.1 #=GS A0A5P8YBN3_YERPE/276-357 AC A0A5P8YBN3.1 #=GS Q9RSA8_DEIRA/269-349 AC Q9RSA8.1 #=GS E8U3T5_DEIML/257-336 AC E8U3T5.1 #=GS H8GG70_METAL/281-361 AC H8GG70.1 #=GS Q2RVZ5_RHORT/280-360 AC Q2RVZ5.1 #=GS A1VWP9_POLNA/279-359 AC A1VWP9.1 #=GS Q5NWT5_AROAE/279-359 AC Q5NWT5.1 #=GS D3RPA4_ALLVD/285-365 AC D3RPA4.1 #=GS A1SUD4_PSYIN/287-367 AC A1SUD4.1 #=GS Q3JCD3_NITOC/292-369 AC Q3JCD3.1 #=GS C8XAU5_NAKMY/305-385 AC C8XAU5.1 #=GS H6N264_GORPV/291-371 AC H6N264.1 #=GS F8A7B9_CELGA/759-840 AC F8A7B9.1 #=GS F4H5N6_CELFA/811-892 AC F4H5N6.1 #=GS D1BEJ8_SANKS/295-375 AC D1BEJ8.1 #=GS E4NAQ4_KITSK/291-371 AC E4NAQ4.1 #=GS F8K488_STREN/279-359 AC F8K488.1 #=GS A6WD80_KINRD/287-371 AC A6WD80.1 #=GS Q0RDF6_FRAAA/285-365 AC Q0RDF6.1 #=GS F8AVP2_9ACTN/278-358 AC F8AVP2.1 #=GS D1A9P2_THECD/292-376 AC D1A9P2.1 #=GS C8W646_DESAS/311-391 AC C8W646.1 #=GS U5LCP5_9BACI/286-365 AC U5LCP5.1 #=GS A4J1D7_DESRM/320-400 AC A4J1D7.1 #=GS F2JGK7_CELLD/289-369 AC F2JGK7.1 #=GS A8MM96_ALKOO/748-828 AC A8MM96.1 Q186J5_CLOD6/281-358 ...YFDVLNIKEKYNITDINFIKPGVGETTRVLLRRVPYKILVKD.LND....KSLDHIFILAKEKNVEVEQM..DLK..AYKCCGIIKN R5XB52_9CLOT/301-379 ..GNCDVKNIKQRYDIEDINFIKPGVGETTRVLLRRIPYKILVDD.LNN....PKLKHILILAKEKNVEVEEF..DFK..AYSCCGIIKN F4EXE7_SELS3/265-346 RSGLAEVERIAGDFGIRDINLVKPGIGEATRVLLRRLPWKLLVKSRTDE....ARLGHLYQLAKEKGVEIVEY..PLE..NYLACGLIRS R5BVZ9_9FIRM/264-345 .QGLDEVLRIGREFKIEDVNLIKPGIGETTRVLLRRVPWKVLVHE.KYMG..DKALEHILRLAKEKNVPVQTY..PLK..NYKACGIIKK Q891X7_CLOTE/298-378 DSGIKEVNEIKNMYKISDINLIKPGVGETTRVLLRRVPWKILINN.LDN....PNLKHIKLLAKDKCIPIEVY..KDM..SYSCCGVIKS C0Z9Y7_BREBN/295-375 WKGMRDIGRIQQELQIDDVNLIKPGVGETTRVLLRRVPWKILVDS.VEN....PNLAHIIMLAKDRGVLVEER..SDM..SYSCCGIIRS E3EE68_PAEPS/297-377 WQGLRDIEAIQQAFGIRDINLVKPGVGETTRVLLRRVPWKILIDR.EDN....PNLQHIMLLAKDRGVPVEVF..EGL..TYSCCGIIKP M1FGD7_9ALTE/290-371 ..ADRTVAAVAKRFGVQNRNRIKPGIAEATRAVLRRRPDCVLVRSLGQD....PDLAALIHLCRQDGVDLIAA..PELTGPYRAITLIRE STIP_ACIAD/297-379 DQSQQVVHKLAQEYDIQNINRIKPSIAEATRAILRRVPDLVLLRD.ADD....EDTRLLRHLTQITKTPVQVV..GDQIAPYRAITLIQK D3VJW4_XENNA/275-357 QLSKTVISNLAEKYQIDSINRIKPGIAEATRAVLRRVPEHVLVRS.LND....PDVALLVHLARQKNVVITEV..GDLIGQYRAVTIIKK A0A5P8YBN3_YERPE/276-357 .QSHQVVKKMAEQFEINSVNRIKPGIAEATRAVLRRVPDHVLVRH.IDD....PDVSLLVYLAKQKKIAIKEV..GNELGQYRAITIIKK Q9RSA8_DEIRA/269-349 QQPVRAVLARAAELGVTDPHLVKPSVGEATRVFLRRQPAHLLLRD.AAH....PDTLHLRELAAASGTPVTMH..PDL..PYLAAAIIAS E8U3T5_DEIML/257-336 HAPVQTALDLARAFGARDPHKVKPSIGEATRVFLRRRPAALVLRA.L.T....PDTAHLHALADAHGVPVHVA..AHL..PYAALALVHE H8GG70_METAL/281-361 AVSLDFLKAVAQQYRISHYNYIKPGIGEATRVLLRREAGRLLLGN.PDS....EATRHLLWLAESKSIPIEVC..PDM..PYRAAALIKE Q2RVZ5_RHORT/280-360 AISTAFVEAMMQRTGITDRNRVKPGIGEATRALLRRMPERLFLRD.PQD....GDVGHLVALASSKGIAVETL..ADL..PYSACAIIKT A1VWP9_POLNA/279-359 AISAEFLQSTTARHRITDVNLIKPGIGEATRVLLRRVPRLLILRD.PSA....PDVAHLKVLASEKSVPLMVD..ADL..PYQAVSLIQS Q5NWT5_AROAE/279-359 EVSRVYMKEAMTQYGVTDENLIKPGIGEATRVLLRRFPQRVIVRD.CHD....RKVAHLVALAEEKAVPVETD..ASL..PYNAVSIIRS D3RPA4_ALLVD/285-365 ARSTALLADIRATFGIQNENFIKPGIGEATRVLLRRVPERVIIRD.PEA....PEVAHLLELAHEKNVRRQVD..PTL..PYQAVSLIKG A1SUD4_PSYIN/287-367 SMTRFFLKEMMQQHHVSNKNRIKPGIAEATRVMLRRVPDLLIVQD.KLS....PSTVHLLKLAKEKNIDVVEM..NDM..PFGACALIKD Q3JCD3_NITOC/292-369 ..TRIYLNRWIDSYGIGDINHIKPGIAEATRVMLRRVPERLLLRD.PGA....EEVAHLLILAEEKGVVVEHQ..PNM..PFNAVAFIK. C8XAU5_NAKMY/305-385 FAGWAAVERIRQQYGIASVNFVKPGVGEATRVLLRRVPWKILVRE.ADH....PDHQHLRLLAADRGVPVEVV..PDL..AYSCVGLVRQ H6N264_GORPV/291-371 WSGWASMERLRDEYGVSSVNFVKPGVGETTRVLLRRVPWMVLVRE.PDL....PEHHHIRVLAAERGVPVEVR..SDL..AYSCVGLVKE F8A7B9_CELGA/759-840 WRGWAAVVRVAQEQGIGDVNLVKPGIGETTRVLLRRVPWKILVRE.DAD...PRDLRHIRQLAHERGVPVEPA..PDL..PYACIGLIHP F4H5N6_CELFA/811-892 WSGWAAVERIVEEYGIGDVNLVKPGVGETTRVLLRRVPWRVLVRP.DAA...DADVAHVRHLAAERGVPVETV..ADL..PYSCVGLIHP D1BEJ8_SANKS/295-375 WAGWKAVEAISAEHGLGDVNLVKPGVGETTRVLLRRVPWKILVRA.DAR....HELGHVLLLAEQRGVEVVEV..QDL..PYSCVGLIHP E4NAQ4_KITSK/291-371 WAGWAAVERISAEYGIDSVNLVKPGVGETTRVLLRRVPWRILARR.GAG....ADLDHVRLLAEQRGVPVEET..DDL..PYTCVGLIHP F8K488_STREN/279-359 WAGWAAVERIGEEYGIHDVNLVKPGVGETTRVLLRRVPWRVLVRP.GAG....PELDHVRLLARRRGVPLVET..EGL..PYACVGLVHP A6WD80_KINRD/287-371 FTGWAEVERVSEHYDIGDVNLVKPGVGETTRVLLRRVPWRVLVRP.EAELRHPDDLAHVRLLAAQRGVVVEEV..PGL..SYSAIGLIHP Q0RDF6_FRAAA/285-365 WAGWAAVERIAAAYDIPDVIMVKPGVGETTRVLLRRVPWRILVAP.DRV....DELPHVLALAADRGVAVEEM..ADL..PFSCVGLVRP F8AVP2_9ACTN/278-358 WAGWQAVETLAKEYGIDNIGLVKPGVGETTRVLLRRVPWKVVVTP.ERL....AELPHVLSLCEAKGVPVEER..ADL..PYSCVGIIKP D1A9P2_THECD/292-376 WAGRRAVRRIGERYGIDDLNLIKPGVGETTRVLLRRVPWQVLARA.DMLD..RRELAHIRLLAAERGVPVVEVEPDAF..PYACMGLIRP C8W646_DESAS/311-391 FRGLRDIERIKEEYGIGNINYIKPGVGETTRVLLRRVPWKVLVKD.AAN....PDLKHIFLLAEERGVSVECC..PDM..SYSCCGLVKT U5LCP5_9BACI/286-365 .RGMEEVMAIKEEYAIESTNYVKPGVGETTRVLLRRVPWKILMRD.PES....PYVRHIKLLAEERGVEIVRY..PDM..SYTCCGLIKK A4J1D7_DESRM/320-400 WLGQKDTTRVQLEYGIKSINYVKPGVGETTRVLLRRIPWKILVRD.MNS....PDIKHVLLLAKDRGVTVEEH..PNL..SYSCYGLIKN F2JGK7_CELLD/289-369 FNAAQSVENIRQCFDISSINRVKPGVGETTRVLLRRVPWKILVKD.KED....KRIKHILLLARDRGVPVEVY..QDM..CYSCCGLIKD A8MM96_ALKOO/748-828 WQGLEDIRRIQKDFAIEDINLIKPGIGETTRVLLRRVPWKILVRD.YDN....PNLRHILLLAKDRNVEVEVY..PQM..TYGCCGLIKP #=GC seq_cons htuhtsVccltpcauIsclNhlKPGlGEsTRVLLRRVPa+lLVRc.sss....s-ltHlhhLAc-+GVsVcph..sch..sYsssGLI+s //