# STOCKHOLM 1.0 #=GF ID DUF6793 #=GF AC PF20593.1 #=GF DE Family of unknown function (DUF6793) #=GF AU Paysan-Lafosse T;0000-0001-5663-0894 #=GF SE MGnify-UniProt clustering #=GF GA 27.00 27.00; #=GF TC 27.00 30.40; #=GF NC 26.80 26.80; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF WK Domain_of_unknown_function #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF CC This family of proteins is functionally uncharacterised. This #=GF CC family of proteins is found in bacteria. Proteins in this family #=GF CC are approximately 110 amino acids in length. Proteins in this #=GF CC family might have an RNA polymerase activity. #=GF SQ 37 #=GS A0A142Y0M6_9BACT/1-108 AC A0A142Y0M6.1 #=GS A0A518G916_9BACT/1-107 AC A0A518G916.1 #=GS A0A5K7XBL9_9BACT/1-107 AC A0A5K7XBL9.1 #=GS A0A518DPI0_9BACT/1-107 AC A0A518DPI0.1 #=GS A0A518IYU6_9BACT/1-109 AC A0A518IYU6.1 #=GS A0A5B9QL94_9BACT/1-108 AC A0A5B9QL94.1 #=GS Q7UZ07_RHOBA/1-108 AC Q7UZ07.1 #=GS A0A5C6E7B6_9BACT/1-108 AC A0A5C6E7B6.1 #=GS A0A5C6FLG3_9BACT/1-108 AC A0A5C6FLG3.1 #=GS A0A518DA14_9BACT/1-107 AC A0A518DA14.1 #=GS A0A518AJH4_9BACT/1-107 AC A0A518AJH4.1 #=GS A0A518KCG9_9BACT/1-109 AC A0A518KCG9.1 #=GS A0A5C5ZG51_9BACT/1-107 AC A0A5C5ZG51.1 #=GS A0A5C5VWN2_9BACT/24-130 AC A0A5C5VWN2.1 #=GS A3ZNL4_9BACT/1-108 AC A3ZNL4.1 #=GS A0A368KPU8_9BACT/1-108 AC A0A368KPU8.1 #=GS A0A5C5XMJ1_9PLAN/1-107 AC A0A5C5XMJ1.1 #=GS A0A517SA07_9PLAN/1-107 AC A0A517SA07.1 #=GS A0A518CNQ0_9PLAN/1-107 AC A0A518CNQ0.1 #=GS A0A517R1T7_9BACT/1-107 AC A0A517R1T7.1 #=GS A0A517PDP9_9PLAN/1-107 AC A0A517PDP9.1 #=GS A0A142WVS6_9PLAN/1-107 AC A0A142WVS6.1 #=GS F0SG08_RUBBR/1-107 AC F0SG08.1 #=GS A0A1P8WFM3_9PLAN/1-107 AC A0A1P8WFM3.1 #=GS A0A517Z6S0_9PLAN/1-107 AC A0A517Z6S0.1 #=GS A6CC69_9PLAN/1-107 AC A6CC69.1 #=GS D5STZ5_PLAL2/1-107 AC D5STZ5.1 #=GS A0A517QQ93_9PLAN/1-107 AC A0A517QQ93.1 #=GS A0A1I3F3I8_9PLAN/1-107 AC A0A1I3F3I8.1 #=GS A0A518B9E5_9BACT/1-107 AC A0A518B9E5.1 #=GS A0A432MFA1_9BACT/1-107 AC A0A432MFA1.1 #=GS A0A5B9WAC7_9BACT/1-107 AC A0A5B9WAC7.1 #=GS A0A142YIW9_9PLAN/1-107 AC A0A142YIW9.1 #=GS L0D9J3_SINAD/1-107 AC L0D9J3.1 #=GS E8R5N4_ISOPI/1-107 AC E8R5N4.1 #=GS A0A5B9PML1_9BACT/1-107 AC A0A5B9PML1.1 #=GS A0A286RK34_9BACT/1-107 AC A0A286RK34.1 A0A142Y0M6_9BACT/1-108 MPLFEIETDSHIFITWADDEAAARDTLADAYPHDQVVRMTKRPRNSWVISKSVLGVPGR.RVDICSIARDCLSKSSGDKLHAIRLYMAETGSDLEKARRIIESNMVMGW A0A518G916_9BACT/1-107 MPLFEIETDSHIIITWADDELAARQVVQEAYATDQILRLTRRPRDTWVISKGVLGLSP..KMDICSVARDCLAKSAGDKLHAIRLYMHETGSDLEKARKVIESNMVMGW A0A5K7XBL9_9BACT/1-107 MPLFEVETDSHIIITWASDSDEASAVVSNAYPHDTVLRLTKRPRDTWVISKSALGLSG..KNDPCNTARDCLSKSGGDKVHAIRLYMHETGSDLEQSQKAIESNMVMGW A0A518DPI0_9BACT/1-107 MPLFEIETDGHIIITWASDDDAATAVVNDAYPHDSVVRITRRPRDSWVISKGALGIRG..NTDPCIVARDCLDKAAGDKVNAIRLYMHETGSDLEKSRKVIESNMVMGW A0A518IYU6_9BACT/1-109 MPLFEIETNAHIIITWAADEDAAHAVVVDAYPTDTVIRMTKRPRDSWVISKGALGLTTTPSLDPCVTARDCLAKSSGDKVHAIRLYMNQTGTDLDAARKVIESNMVMGW A0A5B9QL94_9BACT/1-108 MPLFEIETNAHIIITWAEDEQAAKQVVDEAYPSDELIRMTKRPRDSWVISKGALGLSTP.TVDPCGVARDCLSKSSGDKVHAIRLYRQETGSDLETARKVIESNMVMGW Q7UZ07_RHOBA/1-108 MPLFEIETDAHIIITWAENEDDAREVVDDAYPEDELMRLTKRPRDSWVISKGALGLTDR.TLDPCMTARECLSKSAGDKVNAIRLYRMETGCDLEQARIAIESNMVMGW A0A5C6E7B6_9BACT/1-108 MPLFEVETDSHILITWAEDEDAARAVVAEAYPNDEIARLTKRPRDTWVISKGALGLTST.ANDPCAIARECLSRSSGDKVNAIRLYRMETGSDLEHARKAIESNMVMGW A0A5C6FLG3_9BACT/1-108 MPLFEIETEAHIIITWADSEDEARDVVSDAYPHDEVLRLTKRPRDTWVISKGVLGLTTT.KVDPCLVARDCLSRSAGDKVNAIRLYRMETGSDLENARKAIESNMVIGW A0A518DA14_9BACT/1-107 MPLFEIETDNHIIISWAQDSDSASAIVTDAYPSERVIRLTKRPRDTWVISKAALGIPN..AADVCDSARDCLSKAQGDKVHAIRLYMHETGVDLEQARKAIESNMVMGW A0A518AJH4_9BACT/1-107 MPLFEVETDNHIIITWAEDADSATGVVSDAYPSENVIRMTKRPRDTWVISKGALGITE..QLDICHTARDCLNKAAGDKVHAIRLYMHETGVDLEQARKVIESNMVLGW A0A518KCG9_9BACT/1-109 MPLYEVETRGHIMIMWAEDTDAARAVVAESYPNEEILRLIKRPRDTWVISKAALGITTKGKLDPCTTARECLAKAEGDKVHAIRLFMHEKGVDLDQARKAIESNMVMGW A0A5C5ZG51_9BACT/1-107 MPLFEVETNSHIVITWAEDADAATAVVTENFPSDAVLRLTKRPRDTWVISKAALGIPS..KTDPCQTARECLSRAEGDKVHAIRLYMKEKGVDLEQARKVIESNMVIGW A0A5C5VWN2_9BACT/24-130 MPLFEIETGSHIVISWAEDPESAKKVVTDNFPNEEVLRLTKRPRDTWVISKAALGITA..TMDPCTTARDCLSRAGGDKVHAIRLYMKDKGVDLEQARKAIESNMVMGW A3ZNL4_9BACT/1-108 MPLYEIETNAHILITWAEDEAQAKIVVNDNYPNDDVIRLTKRPRNSWVISKAALGLTDQ.RVDPCLVARDCLSKAEGDKVHAIRLYMNETGVDLDKARKAIESNMVLGW A0A368KPU8_9BACT/1-108 MALFEVETNAHIVITWAEDENEAKGQVYDSYPGDEIIRIAKRPRMSWVISKAALGLTTS.PLDPCMVARDCLSKAEGDKVHAIRLYMHETGNDLNQARKAIESNMVMGW A0A5C5XMJ1_9PLAN/1-107 MPLYEIETNAHIMIGWAENEEQARSTAHEHYPDDDIVRINRRPRDLWVISKGLLGFPQ..NEVLCNTARDCLSKAQGDKEDAIRLYMQETGVDQQAAQRAIETNMSLGW A0A517SA07_9PLAN/1-107 MPLYEIETNAHIMIGWAASQEGAHAIANEHYPAEEITRITKRPRDIWVISKKLLGIES..AEEPCDTARDCLSKAHGDKLHAIRLFMHETGSDLHQSQKAIETNMSLGW A0A518CNQ0_9PLAN/1-107 MPLYEIETNQHIMIGWADSTDEARDIAGEHYPDEEVVRVTKRPRDIWVISKSLLGIES..QAEPCDTARDCLSRASGDKIHAIRLYMLDTGSDMQEAQRAIETNMSLGW A0A517R1T7_9BACT/1-107 MALYEIETNQHIMISWAENQDDAVQIAEKHYPEEEVVRVTRRPRDIWVISKGMLGIRD..SVEPCDTARDCLSRARGDKVHAIRLYMLDTGSDLHEAQRAIETNMSLGW A0A517PDP9_9PLAN/1-107 MALYEIETSAHIMISEADTEEAAREVAREHYPEEDVLRVARRPRDVWVISKGLLGIRG..AAAPDTNARECLARAAGDKLHAIRLYMLDTGTDLHEAQRAIETNMSLGW A0A142WVS6_9PLAN/1-107 MPLFEIETNAHIMISWADSVDTARRIAGEHYPEEDVVRITKRPRDLWVISKGMLGIAG..PSKPCDVARDCLAQASGDKLHAIRLYMSSTGTDLHDAQRAIETNMSLGW F0SG08_RUBBR/1-107 MALYEIETTAHIMISWADSEEQARSHAEEHYPEEDVLRIRKRPRDLWVISKRMLGLEG..PVDPCDTARECLARASGDKLHAIRLYMIDTGSDLHEAQRAIEANMSLGW A0A1P8WFM3_9PLAN/1-107 MALYEIETESHIMVGWASSLEQAEHIAAQHYPEEKIRRIAKRPRDLWVISKRLLGLTG..NGEPCDVARDCLNRASGDKLHAIRLYMIDTGSDLKEAQRVIESNMAMGW A0A517Z6S0_9PLAN/1-107 MALYEIETSGHIMIGWADSQDEAERIAQEHYPEDEITRITRRPRDLWVISKRLLGIEG..NSEPCDTARDCLARAAGDKLHAIRLYMLDTGSDLHEAQRAIETNMSLGW A6CC69_9PLAN/1-107 MALYEIETNAHIMVGWANTQEEAENAAQENYPEDEILRVTRRPRDMWVISKRLLGIEG..HTEPCDMARECLFRASGDKVHAIRLYMRDTGADLHEAQLAIETNMSVGW D5STZ5_PLAL2/1-107 MPLFEIETSAHIMVAWTESREDAEALTQETFPDEEILRIGRRPRDAWVISKRLLGLTG..PASPSEMARDCLAKSHGNKIEAIHLYMVGMGVSEDEAQRAIETNMSLGW A0A517QQ93_9PLAN/1-107 MPLFEIETDAHIMVGWAANDEEAIQLAQEHYPDEAVRRVLQRPRDVWVISKRLLGIES..SVTPCEVARDCLSKASGDKVHAIRLYRQETGVDLHEAQLAIESNMSLGW A0A1I3F3I8_9PLAN/1-107 MPLFEIETTAHIMIGWAENDIEARGFAHEHYPEEEITRVSKRPRDVWVISKRLLGLET..VSDPCDTARECLARASGDKVHAIRLFMHETGSDLHEAQKMIETNMSLGW A0A518B9E5_9BACT/1-107 MALFEVETDAHIMIVWADDKDQAKEFCHSNYPEEEVLRVGVRPRDAWVISKRLLGIED..NVDPCATARECLAKARGDKLHAIRLYMHETGTDLEQARKAIESNMAIGW A0A432MFA1_9BACT/1-107 MPLFEVETTSHIMIACVNGEQDARAFAERNYPGEEVLRVTHRPRDAWVISKRLLGIEG..GIDPCTKARECLASARGDKLHAMRLYMQQTGTDLDQARKVIESNMSLGW A0A5B9WAC7_9BACT/1-107 MPLFEVETTSHIMIACAEDQEAARAFANTNYPTEEIIRVAHRPRDAWVISKKLLGIQG..DADPCHIARDCLAKAAGDKLHAVRLYMQSTGADLDGARKAVESNMSRGW A0A142YIW9_9PLAN/1-107 MPLFEVETTSHIMIAFAESEASARTFAQTNYPTEEILRVSQRPRDAWVISKNLLGLQA..DVDPCSTARECLANAAGDKLHAVRLYMHKTGSDLEQARKVVESNMSRGW L0D9J3_SINAD/1-107 MPLYEVETTSHIMIACVDDEASARGFASANYPSEEVLRVSHRPRDAWVISKNLLGLKG..TLDPCATARDCLAKAQGDKLHAVRLYMQQTGCDLDGARKAIESNMATGW E8R5N4_ISOPI/1-107 MPLFEVETTSHIMIASADDEKAAREFAATNYPTEEIIRVTHRPRDAWVISKNLLGIVG..TIDVCATARECLAQAKGDKLHAVRLYMNHTGSDLEQARKVIESNMAMGW A0A5B9PML1_9BACT/1-107 MPLFEIETDAHIIITWADDENDARDVAKDSYPGESILRLSKRPRNSWVISKGVLGIKI..KTDPCGVARDCLSKASGDKVHAIRLYMQQTGDDLEQSRKVIETNMVMGW A0A286RK34_9BACT/1-107 MPLYEIETEYHIIITWADDEESAKNVVRENYPREAIIRIAKRPRNSWVISKAGLGIVG..KTDPCHIARECLARAAGDKIHAIRLYMQETGADLERARKVIESNMIMGW #=GC seq_cons MPLFEIETsuHIhIsWA-sc-sA+slsp-sYPp--llRlo+RPRDsWVISKuhLGlps..ssDPCssARDCLu+AuGDKlHAIRLYMp-TGsDL-pARKAIESNMshGW //