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Powering down the Pfam website
On October 5th, we began redirecting traffic from Pfam (pfam.xfam.org) to InterPro (www.ebi.ac.uk/interpro). The Pfam website will remain available at pfam-legacy.xfam.org until January 2023, when it will be decommissioned. You can read more about the sunset period in our blog post.

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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
R-HINP1I PF11463 Family 3 28 186.5 44 76.93 Changed R.HinP1I restriction endonuclease
R2K_2 PF18299 Domain 42 252 147.2 30 59.83 Changed ATP-grasp domain, R2K clade family 2
R2K_3 PF14243 Domain 47 473 174.8 21 63.46 Changed ATP-grasp domain, R2K clade family 3
R3H PF01424 Domain 635 13268 60.3 24 9.44 Changed R3H domain
R3H-assoc PF13902 Domain 48 1172 121.8 25 38.48 Changed R3H-associated N-terminal domain
RA PF00788 Domain 39 24686 91.2 19 9.56 Changed Ras association (RalGDS/AF-6) domain
Rab15_effector PF15208 Family 9 201 218.9 45 82.44 Changed Rab15 effector
Rab3-GAP_cat_C PF19533 Domain 9 645 180.7 54 21.69 Changed Rab3 GTPase-activating protein catalytic subunit C-terminal
Rab3-GTPase_cat PF13890 Family 43 1670 147.6 46 18.58 Changed Rab3 GTPase-activating protein catalytic subunit
RAB3GAP2_C PF14656 Family 22 1022 421 36 41.8 Changed Rab3 GTPase-activating protein regulatory subunit C-terminus
RAB3GAP2_N PF14655 Family 35 1322 340.1 37 35.9 Changed Rab3 GTPase-activating protein regulatory subunit N-terminus
Rab5-bind PF09311 Coiled-coil 4 1617 204.5 38 40.57 Changed Rabaptin-like protein
Rabaptin PF03528 Coiled-coil 3 1210 288.8 46 46.51 Changed Rabaptin
RabGAP-TBC PF00566 Family 69 45249 196.5 20 28.05 Changed Rab-GTPase-TBC domain
RabGGT_insert PF07711 Domain 9 305 95 51 17.83 Changed Rab geranylgeranyl transferase alpha-subunit, insert domain
Rab_bind PF16704 Domain 3 512 63.6 64 4.59 Changed Rab binding domain
Rab_eff_C PF04698 Family 7 1359 325.7 29 56.95 Changed Rab effector MyRIP/melanophilin C-terminus
Rac1 PF09632 Domain 2 2 295 38 40.38 Changed Rac1-binding domain
RACo_C_ter PF14574 Family 131 1755 250.8 36 42.78 Changed C-terminal domain of RACo the ASKHA domain
RACo_linker PF17650 Family 191 1058 89.3 28 14.04 Changed RACo linker region
Raco_middle PF17651 Family 101 1715 159 33 26.63 Changed RACo middle region
RAC_head PF16717 Domain 71 1251 94 35 17.86 Changed Ribosome-associated complex head domain
Rad1 PF02144 Family 23 1799 238.1 29 76.98 Changed Repair protein Rad1/Rec1/Rad17
Rad10 PF03834 Family 110 1742 110 49 33.24 Changed Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Rad17 PF03215 Domain 3 2017 167.5 26 24.9 Changed Rad17 P-loop domain
Rad21_Rec8 PF04824 Family 14 3414 52.7 30 7.9 Changed Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 Family 105 4088 105.4 38 15.57 Changed N terminus of Rad21 / Rec8 like protein
Rad33 PF08730 Family 12 71 111.2 25 51.85 Changed Rad33
Rad4 PF03835 Domain 25 2866 140.9 24 17.07 Changed Rad4 transglutaminase-like domain
Rad50_zn_hook PF04423 Motif 52 953 51.6 36 4.33 Changed Rad50 zinc hook motif
Rad51 PF08423 Domain 21 9382 226.8 27 69.1 Changed Rad51
RAD51_interact PF15696 Family 18 507 38.6 50 8.05 Changed RAD51 interacting motif
Rad52_Rad22 PF04098 Family 34 2127 138.6 33 36.96 Changed Rad52/22 family double-strand break repair protein
Rad54_N PF08658 Family 81 806 169.8 36 19.7 Changed Rad54 N terminal
Rad60-SLD PF11976 Family 32 6024 67.5 36 35.87 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD_2 PF13881 Domain 20 2482 105.9 30 61.63 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad9 PF04139 Family 8 2093 237.2 26 57.93 Changed Rad9
Rad9_Rad53_bind PF08605 Family 7 167 137.9 34 10.5 Changed Fungal Rad9-like Rad53-binding
RadC PF04002 Family 790 8219 118.5 35 53.21 Changed RadC-like JAB domain
Radial_spoke PF04712 Family 37 1442 308.4 25 73.88 Changed Radial spokehead-like protein
Radial_spoke_3 PF06098 Family 43 828 250.7 41 59.43 Changed Radial spoke protein 3
Radical_SAM PF04055 Domain 491 134611 169.5 14 41.73 Changed Radical SAM superfamily
Radical_SAM_2 PF19238 Domain 97 918 150.4 51 33.66 Changed Radical SAM-like domain
Radical_SAM_C PF16199 Family 501 4962 83.7 32 19.54 Changed Radical_SAM C-terminal domain
Radical_SAM_N PF08497 Family 272 2143 318.4 50 47.69 Changed Radical SAM N-terminal
Radical_SAM_N2 PF19864 Domain 711 2445 149.1 44 23.06 Changed Radical SAM proteins, N-terminal
Raf1_HTH PF18579 Domain 67 335 60.7 46 14.72 Changed Rubisco accumulation factor 1 helix turn helix domain
Raf1_N PF18578 Domain 70 340 106.2 43 25.81 Changed Rubisco accumulation factor 1 alpha helical domain
Raffinose_syn PF05691 Family 4 3328 442.3 29 77.12 Changed Raffinose synthase or seed imbibition protein Sip1
Raftlin PF15250 Family 14 953 322.8 35 80.57 Changed Raftlin
RAG1 PF12940 Family 2 279 597.4 76 61.86 Changed Recombination-activation protein 1 (RAG1), recombinase
RAG1_imp_bd PF12560 Family 17 278 258 44 27.03 Changed RAG1 importin binding
RAG2 PF03089 Repeat 11 250 325.2 64 62.76 Changed Recombination activating protein 2
RAG2_PHD PF13341 Domain 8 237 78 73 14.92 Changed RAG2 PHD domain
Ragweed_pollen PF03913 Family 3 0 0 0 0 Changed Ragweed group 5 pollen allergen
RAI1 PF08652 Family 117 1554 71.5 41 17.41 Changed RAI1 like PD-(D/E)XK nuclease
RAI16-like PF10257 Repeat 20 2831 343.8 29 40.61 Changed Retinoic acid induced 16-like protein
Ral PF11058 Family 2 28 58 86 100 Changed Antirestriction protein Ral
RALF PF05498 Family 52 2487 61.5 40 49.7 Changed Rapid ALkalinization Factor (RALF)
RalF_SCD PF18248 Domain 3 7 148.9 44 29.67 Changed RalF C-terminal Sec-7 capping domain
RALGAPB_N PF20412 Domain 42 3156 124.9 41 7.1 New RALGAPB N-terminal domain
RAM PF15320 Family 26 386 81.5 39 61.72 Changed mRNA cap methylation, RNMT-activating mini protein
RAMA PF18755 Domain 84 2300 103.9 29 19.09 Changed Restriction Enzyme Adenine Methylase Associated
RAMP PF04901 Family 48 1053 106.9 38 63.29 Changed Receptor activity modifying family
RAMP4 PF06624 Family 56 1693 58.5 40 60.32 Changed Ribosome associated membrane protein RAMP4
RAMPs PF03787 Family 147 3181 238 14 66.5 Changed RAMP superfamily
RamS PF19402 Family 70 292 41.8 49 99.33 Changed Lanthionine-containing peptide SapB precursor RamS
Ran-binding PF05508 Family 77 587 321 42 53.96 Changed RanGTP-binding protein
RanGAP1_C PF07834 Domain 13 677 164.8 41 30.82 Changed RanGAP1 C-terminal domain
RANK_CRD_2 PF18278 Domain 5 280 40.8 77 8.64 Changed Receptor activator of the NF-KB cysteine-rich repeat domain 2
Ran_BP1 PF00638 Domain 8 8989 116.2 33 21.6 Changed RanBP1 domain
RAP PF08373 Domain 63 2920 58.6 28 8.11 Changed RAP domain
RAP-1 PF03085 Family 6 42 227.5 22 67.61 Changed Rhoptry-associated protein 1 (RAP-1)
RAP1 PF07218 Family 2 28 621.8 51 97.08 Changed Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind PF09197 Domain 14 85 106.5 34 16.69 Changed Rap1, DNA-binding
Rap1a PF18602 Domain 130 527 93.3 21 72.53 Changed Rap1a immunity proteins
Rap1_C PF11626 Family 74 721 86.1 28 13.86 Changed TRF2-interacting telomeric protein/Rap1 - C terminal domain
RAP80_UIM PF18282 Domain 2 336 55.9 78 7.95 Changed RAP80 N-terminal ubiquitin interaction motif
RapA_C PF12137 Domain 62 841 347.3 35 38.15 Changed RNA polymerase recycling family C-terminal
RapH_N PF18801 Family 47 143 61.2 30 17.08 Changed response regulator aspartate phosphatase H, N terminal
Rapsyn_N PF10579 Repeat 2 528 78.8 58 17.73 Changed Rapsyn N-terminal myristoylation and linker region
Raptor_N PF14538 Domain 54 2263 144 60 11.05 Changed Raptor N-terminal CASPase like domain
Rap_GAP PF02145 Family 212 9877 179.4 39 13.68 Changed Rap/ran-GAP
Ras PF00071 Domain 60 116397 150.8 29 56.08 Changed Ras family
RasGAP PF00616 Family 50 18500 127.7 23 13.41 Changed GTPase-activator protein for Ras-like GTPase
RasGAP_C PF03836 Family 110 3237 131 36 9.6 Changed RasGAP C-terminus
RasGEF PF00617 Family 619 24240 182.1 26 18.53 Changed RasGEF domain
RasGEF_N PF00618 Domain 52 16257 106.5 23 9.85 Changed RasGEF N-terminal motif
RasGEF_N_2 PF14663 Domain 72 1723 107.3 44 7.4 Changed Rapamycin-insensitive companion of mTOR RasGEF_N domain
Ras_bdg_2 PF14847 Domain 42 733 104.7 34 10.93 Changed Ras-binding domain of Byr2
Rav1p_C PF12234 Family 61 3877 420.6 23 24.98 Changed RAVE protein 1 C terminal
RAWUL PF16207 Domain 56 3021 71.2 36 19.06 Changed RAWUL domain RING finger- and WD40-associated ubiquitin-like
Rax2 PF12768 Family 69 721 146.8 31 11.38 Changed Cortical protein marker for cell polarity
RBB1NT PF08169 Domain 28 1009 92 49 7.12 Changed RBB1NT (NUC162) domain
RbcS PF12338 Family 10 570 39.4 54 21.95 Changed Ribulose-1,5-bisphosphate carboxylase small subunit
RbcX PF02341 Family 29 682 104.6 38 54.24 Changed RbcX protein
RBD PF02196 Domain 54 4723 69.1 30 8.28 Changed Raf-like Ras-binding domain
RBD-FIP PF09457 Motif 10 3191 44.3 38 5.74 Changed FIP domain
RBDV_coat PF06593 Family 1 2 267.5 30 98.53 Changed Raspberry bushy dwarf virus coat protein
RBFA PF02033 Family 709 8617 105 31 71.4 Changed Ribosome-binding factor A
RBM1CTR PF08081 Family 9 649 45 66 12.21 Changed RBM1CTR (NUC064) family
RBM39linker PF15519 Domain 86 2680 88.7 35 17.11 Changed linker between RRM2 and RRM3 domains in RBM39 protein
RbpA PF13397 Family 49 2576 102.8 48 88.64 Changed RNA polymerase-binding protein
RBP_receptor PF14752 Family 31 1208 429.6 30 80.21 Changed Retinol binding protein receptor
RBR PF17208 Family 40 1440 56.5 43 10.14 Changed RNA binding Region
RbsD_FucU PF05025 Family 246 3148 134 30 94.48 Changed RbsD / FucU transport protein family
Rbsn PF11464 Domain 91 1586 41.9 40 8.05 Changed Rabenosyn Rab binding domain
Rbx_binding PF18113 Domain 41 512 70.8 34 18.02 Changed Rubredoxin binding C-terminal domain
RB_A PF01858 Domain 62 2480 188.6 40 20.65 Changed Retinoblastoma-associated protein A domain
RB_B PF01857 Domain 74 2380 141.7 41 15.18 Changed Retinoblastoma-associated protein B domain
Rb_C PF08934 Domain 5 790 130.1 48 14.43 Changed Rb C-terminal domain
RC-P840_PscD PF10657 Family 4 12 138.1 66 98.81 Changed Photosystem P840 reaction centre protein PscD
RCC1 PF00415 Repeat 101 111186 51.5 30 20.54 Changed Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 Repeat 175 16393 29.8 35 4.65 Changed Regulator of chromosome condensation (RCC1) repeat
RCC_reductase PF06405 Family 11 356 221 40 75.87 Changed Red chlorophyll catabolite reductase (RCC reductase)
Rcd1 PF04078 Repeat 52 2713 226.2 59 72.36 Changed Cell differentiation family, Rcd1-like
RCDG1 PF15725 Family 3 129 76.6 67 66.73 Changed Renal cancer differentiation gene 1 protein
Rce1-like PF02517 Family 683 23313 121 20 41.42 Changed Type II CAAX prenyl endopeptidase Rce1-like
RcnB PF11776 Family 66 1412 50.1 32 28.5 Changed Nickel/cobalt transporter regulator
RcpB PF16971 Family 2 23 127.7 20 79.54 Changed Rough colony protein B, tight adherence - tad - subunit
RcpC PF16976 Family 129 3420 110.7 27 39.93 Changed Flp pilus assembly protein RcpC/CpaB
RCR PF12273 Family 49 854 127.3 26 68.74 Changed Chitin synthesis regulation, resistance to Congo red
RCS1 PF07326 Family 14 460 187.8 41 85.93 Changed Regulator of chromosome segregation 1
RcsC PF09456 Domain 13 118 91 38 9.94 Changed RcsC Alpha-Beta-Loop (ABL)
RCSD PF05177 Family 8 277 91.1 39 13.5 Changed RCSD region
RcsD_ABL PF16359 Domain 11 112 103.1 48 12.18 Changed RcsD-ABL domain
RcsF PF16358 Family 8 202 104.8 38 80.26 Changed RcsF lipoprotein
RD3 PF14473 Family 29 647 127.7 41 61.69 Changed RD3 protein
RDD PF06271 Family 49 12720 134.6 19 56.81 Changed RDD family
RdDM_RDM1 PF09187 Domain 11 256 113.8 59 60.77 Changed RNA-directed DNA methylation 1
RdgC PF04381 Family 96 1666 282.3 32 93.78 Changed Putative exonuclease, RdgC
RDM PF11002 Domain 16 153 41.9 63 13.99 Changed RFPL defining motif (RDM)
RdRP PF05183 Family 256 5206 481.3 24 48.09 Changed RNA dependent RNA polymerase
RdRP_1 PF00680 Family 19 867 373.9 14 16.58 Changed Viral RNA-dependent RNA polymerase
RdRP_2 PF00978 Family 36 433 376 19 19.87 Changed RNA dependent RNA polymerase
RdRP_3 PF00998 Family 32 221 433.3 27 58.97 Changed Viral RNA dependent RNA polymerase
RdRP_4 PF02123 Family 28 260 415.9 16 42.9 Changed Viral RNA-directed RNA-polymerase
RdRP_5 PF07925 Family 3 20 1139.8 42 98.16 Changed Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3 PF09231 Family 2 5 845.2 26 93.93 Changed Rice dwarf virus p3
Rdx PF10262 Family 227 3761 90.3 30 59.21 Changed Rdx family
Read-through PF16814 Domain 1 3 183.3 54 55.61 Changed Read-through domain
RebB PF11747 Family 30 562 66.2 40 65.28 Changed Killing trait
REC1 PF18501 Domain 10 35 234.7 29 20.89 Changed Alpha helical recognition lobe domain
REC104 PF17378 Family 1 3 182 68 98.56 Changed Meiotic recombination protein REC104
REC114-like PF15165 Family 7 449 152.5 35 87.72 Changed Meiotic recombination protein REC114-like
RecA PF00154 Family 14 9903 250.8 62 70.92 Changed recA bacterial DNA recombination protein
RecA_dep_nuc PF16786 Domain 3 67 93.6 29 73.51 Changed Recombination enhancement, RecA-dependent nuclease
RecC_C PF17946 Domain 130 1652 232.6 22 21.13 Changed RecC C-terminal domain
Receptor_2B4 PF11465 Domain 3 413 100.4 25 32.68 Changed Natural killer cell receptor 2B4
Receptor_IA-2 PF11548 Family 24 1021 82.4 44 9.08 Changed Protein-tyrosine phosphatase receptor IA-2
Recep_L_domain PF01030 Repeat 50 11867 113.2 29 18.99 Changed Receptor L domain
RecG_dom3_C PF19833 Domain 8 7469 76.3 37 10.75 Changed ATP-dependent DNA helicase RecG, domain 3, C-terminal
RecG_N PF17190 Domain 7 16 86.6 29 11.08 Changed RecG N-terminal helical domain
RecG_wedge PF17191 Domain 6 6567 162.8 24 23.27 Changed RecG wedge domain
RecJ_OB PF17768 Domain 523 6395 107.4 26 17.26 Changed RecJ OB domain
Recombinase PF07508 Domain 66 12386 105.2 22 21.63 Changed Recombinase
RecO_C PF02565 Family 84 7469 146.2 19 59.31 Changed Recombination protein O C terminal
RecO_N PF11967 Domain 87 7440 78.9 25 31.94 Changed Recombination protein O N terminal
RecO_N_2 PF13114 Domain 11 75 71.4 47 34.21 Changed RecO N terminal
RecQ5 PF06959 Family 12 320 181.7 36 20.05 Changed RecQ helicase protein-like 5 (RecQ5)
RecQ_Zn_bind PF16124 Domain 689 14318 66.8 27 8.86 Changed RecQ zinc-binding
RecR PF02132 Family 748 7662 39.7 35 19.86 Changed RecR protein
RecT PF03837 Family 72 1549 188.3 18 65.08 Changed RecT family
RecU PF03838 Domain 144 1230 160.1 40 84.57 Changed Recombination protein U
RecX PF02631 Family 88 6799 125.9 22 62.08 Changed RecX family
Red1 PF07964 Family 10 45 424.5 18 73.98 Changed Rec10 / Red1
Redoxin PF08534 Domain 52 20243 143.3 18 65.34 Changed Redoxin
Reductase_C PF14759 Domain 65 6635 81.5 26 18.62 Changed Reductase C-terminal
RED_C PF07807 Family 13 893 105.5 57 19.34 Changed RED-like protein C-terminal region
RED_N PF07808 Family 25 1670 184.4 30 35.98 Changed RED-like protein N-terminal region
Reeler PF02014 Family 129 3236 123.6 24 15.53 Changed Reeler domain
REF PF05755 Family 29 855 173.2 37 72.41 Changed Rubber elongation factor protein (REF)
REGB_T4 PF10715 Domain 1 55 146.4 53 97.39 Changed T4-page Endoribonuclease RegB
Regnase_1_C PF18561 Domain 8 1097 44.8 50 6 Changed Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Regulator_TrmB PF11495 Family 22 834 167.2 16 55.84 Changed Archaeal transcriptional regulator TrmB
Reg_prop PF07494 Repeat 659 24168 23.9 33 6.93 Changed Two component regulator propeller
REJ PF02010 Family 23 2391 350.8 16 16.14 Changed REJ domain
Relaxase PF03432 Family 17 4617 222.2 15 49.18 Changed Relaxase/Mobilisation nuclease domain
RelA_AH_RIS PF19296 Domain 82 8264 147.2 24 21.81 Changed RelA/SpoT, AH and RIS domains
RelA_SpoT PF04607 Family 89 15208 115.8 39 18.83 Changed Region found in RelA / SpoT proteins
RelB PF04221 Domain 5 2376 79.7 23 84.86 Changed RelB antitoxin
RelB_leu_zip PF16180 Domain 5 118 77.4 74 14.51 Changed RelB leucine zipper
RelB_N PF18506 Domain 25 77 46.4 41 67.09 Changed RelB Antitoxin alpha helical domain
RelB_transactiv PF16181 Domain 2 162 161.3 71 29.64 Changed RelB transactivation domain
RelE PF06296 Domain 19 1120 103.8 25 90.55 Changed RelE toxin of RelE / RelB toxin-antitoxin system
RELT PF12606 Family 13 849 41.5 58 11.89 Changed Tumour necrosis factor receptor superfamily member 19
Remorin_C PF03763 Family 94 3540 101.7 33 28.86 Changed Remorin, C-terminal region
Remorin_N PF03766 Family 21 596 54.9 43 27.17 Changed Remorin, N-terminal region
Renin_r PF07850 Family 28 785 97.3 50 24.46 Changed Renin receptor-like protein
Reoviridae_Vp9 PF08978 Domain 2 5 249.6 34 89.33 Changed Reoviridae VP9
Reovirus_cap PF00979 Family 5 9 337.3 27 90.09 Changed Reovirus outer capsid protein, Sigma 3
Reovirus_L2 PF06016 Family 3 18 1289.5 29 99.9 Changed Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2 PF05993 Family 3 18 658 32 98.73 Changed Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2 PF07781 Family 3 18 690.4 25 94.1 Changed Reovirus minor core protein Mu-2
Reo_P9 PF06043 Family 1 4 318.2 56 99.84 Changed Reovirus P9-like family
Reo_sigma1 PF01664 Family 3 2 217.5 26 47.03 Changed Reovirus viral attachment protein sigma 1
Reo_sigmaC PF04582 Domain 4 1 130 100 39.88 Changed Reovirus sigma C capsid protein C-terminal domain
Reo_sigmaC_M PF17750 Family 4 1 40 100 12.27 Changed Reovirus sigma C capsid protein triple beta spiral
Rep-A_N PF04057 Domain 11 2422 96.7 30 15.91 Changed Replication factor-A protein 1, N-terminal domain
RepA1_leader PF08048 Family 5 6 24.2 67 100 Changed Tap RepA1 leader peptide
RepA_C PF04796 Family 3 384 157.5 30 47.68 Changed Plasmid encoded RepA protein
RepA_N PF06970 Family 14 892 73.9 39 30.17 Changed Replication initiator protein A (RepA) N-terminus
REPA_OB_2 PF16900 Domain 102 3553 98 30 16.57 Changed Replication protein A OB domain
RepB PF07506 Family 15 1322 168.6 19 53.32 Changed RepB plasmid partitioning protein
RepB-RCR_reg PF10723 Domain 3 63 74 29 84.43 Changed Replication regulatory protein RepB
RepB_primase PF16793 Domain 12 300 187 16 35.75 Changed RepB DNA-primase from phage plasmid
RepC PF06504 Family 4 60 262.8 38 88.26 Changed Replication protein C (RepC)
RepL PF05732 Family 3 203 119.2 18 67.32 Changed Firmicute plasmid replication protein (RepL)
Replicase PF03090 Family 11 129 122.9 29 36.99 Changed Replicase family
Replic_Relax PF13814 Family 27 990 179.3 19 59.76 Changed Replication-relaxation
Repressor_Mnt PF11423 Family 2 13 27.9 76 33.12 Changed Regulatory protein Mnt
Reprolysin PF01421 Domain 17 16858 190.6 28 20.37 Changed Reprolysin (M12B) family zinc metalloprotease
Reprolysin_2 PF13574 Domain 6 1310 195 40 26.34 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_3 PF13582 Domain 23 690 124 23 18.58 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_4 PF13583 Domain 4 1152 185.8 21 21.41 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_5 PF13688 Family 47 2919 205.5 22 26.37 Changed Metallo-peptidase family M12
RepSA PF20199 Family 98 1239 407.1 35 90.61 New Replication initiator protein, pSAM2
Rep_1 PF01446 Family 16 258 198.9 22 66.27 Changed Replication protein
Rep_1B PF17873 Domain 1 2 53 100 1.67 Changed Replicase polyprotein 1ab
Rep_2 PF01719 Family 7 174 173 20 59.68 Changed Plasmid replication protein
Rep_3 PF01051 Family 159 1924 214.1 17 61.78 Changed Initiator Replication protein
Rep_4 PF05797 Family 2 8 237.6 24 82.51 Changed Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3 PF08661 Domain 18 1627 103.8 25 79.4 Changed Replication factor A protein 3
Rep_fac-A_C PF08646 Family 29 5535 136.5 22 25.18 Changed Replication factor-A C terminal domain
Rep_fac_C PF08542 Domain 316 5871 86.9 23 23.88 Changed Replication factor C C-terminal domain
Rep_N PF08724 Domain 9 11 173.7 30 28.92 Changed Rep protein catalytic domain like
Rep_Org_C PF06926 Family 3 25 92.9 62 34.82 Changed Putative replisome organiser protein C-terminus
Rep_trans PF02486 Family 34 595 184.4 25 50.83 Changed Replication initiation factor
Rer1 PF03248 Family 117 2524 153.7 52 77.81 Changed Rer1 family
RES PF08808 Domain 180 3909 156.7 17 72.25 Changed RES domain
ResB PF05140 Family 184 5331 310 16 63.8 Changed ResB-like family
ResIII PF04851 Family 52 35851 163.4 18 20 Changed Type III restriction enzyme, res subunit
Resistin PF06954 Family 28 264 80.6 51 62.94 Changed Resistin
Resolvase PF00239 Domain 112 23282 138.2 23 39.7 Changed Resolvase, N terminal domain
RESP18 PF14948 Family 10 799 87.9 34 10.73 Changed RESP18 domain
Response_reg PF00072 Domain 52 391374 112.3 25 29.26 Changed Response regulator receiver domain
Response_reg_2 PF19192 Domain 42 71 174.1 18 31.04 Changed Response receiver domain
RestrictionMunI PF11407 Family 2 10 162.2 45 93.87 Changed Type II restriction enzyme MunI
RestrictionSfiI PF11487 Family 3 8 219.6 49 89.32 Changed Type II restriction enzyme SfiI
Ret2_MD PF18528 Domain 2 20 93.2 75 18.62 Changed RNA editing 3' terminal uridylyl transferase 2 middle domain
RETICULATA-like PF11891 Family 40 1934 161.8 36 37.58 Changed Protein RETICULATA-related
Reticulon PF02453 Family 212 7818 151.5 26 42.57 Changed Reticulon
Retinal PF15449 Family 17 502 607.9 23 92.8 Changed Retinal protein
Retinin_C PF04527 Family 14 271 68.5 43 48.87 Changed Drosophila Retinin like protein
Retrotrans_gag PF03732 Family 55 23306 91.3 17 18.34 Changed Retrotransposon gag protein
Retrotran_gag_2 PF14223 Family 41 23222 115 16 27.93 Changed gag-polypeptide of LTR copia-type
Retrotran_gag_3 PF14244 Family 14 3248 44.8 34 11.43 Changed gag-polypeptide of LTR copia-type
Retrotran_gag_4 PF17241 Domain 20 92 134.7 28 19.3 Changed Ty5 Gag N-terminal region
Retro_M PF02813 Family 1 28 85.2 52 13.69 Changed Retroviral M domain
RET_CLD1 PF17756 Domain 18 382 119.3 46 11.38 Changed RET Cadherin like domain 1
RET_CLD3 PF17812 Domain 13 389 114 55 10.88 Changed RET Cadherin like domain 3
RET_CLD4 PF17813 Domain 23 386 106.1 50 10.05 Changed RET Cadherin like domain 4
REV PF00424 Family 2 35 90.7 53 81.3 Changed REV protein (anti-repression trans-activator protein)
REV1_C PF16727 Domain 184 1197 89.8 35 7.79 Changed DNA repair protein REV1 C-terminal domain
RexA PF15969 Family 4 20 191.9 51 82.31 Changed Intracellular sensor of Lambda phage, Abi component
RexB PF15968 Family 1 13 129.2 85 97 Changed Membrane-anchored ion channel, Abi component
RE_AccI PF09545 Family 3 23 234.7 29 95.19 Changed AccI restriction endonuclease
RE_Alw26IDE PF09665 Family 3 20 429.7 37 89.93 Changed Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI PF09491 Family 5 200 366.9 19 74.26 Changed AlwI restriction endonuclease
RE_ApaLI PF09499 Family 3 46 136.6 52 83.52 Changed ApaLI-like restriction endonuclease
RE_AspBHI_N PF18062 Domain 12 114 181.4 30 47.83 Changed Restriction endonuclease AspBHI N-terminal
RE_Bpu10I PF09549 Family 7 66 178.1 31 70.47 Changed Bpu10I restriction endonuclease
RE_BsaWI PF18643 Domain 15 50 101.2 25 39.86 Changed BsaWI restriction endonuclease type 2
RE_Bsp6I PF09504 Family 1 10 163.5 29 91.14 Changed Bsp6I restriction endonuclease
RE_BstXI PF09552 Family 2 10 233.9 38 66.13 Changed BstXI restriction endonuclease
RE_CfrBI PF09516 Family 2 31 235.2 31 77.53 Changed CfrBI restriction endonuclease
RE_Eco29kI PF09517 Family 14 152 150.4 35 65.46 Changed Eco29kI restriction endonuclease
RE_Eco47II PF09553 Family 14 115 193 39 77.85 Changed Eco47II restriction endonuclease
RE_EcoO109I PF14511 Family 13 146 186.3 32 73.47 Changed Type II restriction endonuclease EcoO109I
RE_endonuc PF19778 Domain 27 876 107.3 36 11.81 Changed Endonuclease domain
RE_HaeII PF09554 Family 3 26 311.2 52 91.63 Changed HaeII restriction endonuclease
RE_HaeIII PF09556 Family 7 62 265.1 41 84.6 Changed HaeIII restriction endonuclease
RE_HindIII PF09518 Family 4 26 270.3 33 94.59 Changed HindIII restriction endonuclease
RE_HindVP PF09519 Family 11 52 261.1 38 92.27 Changed HindVP restriction endonuclease
RE_HpaII PF09561 Family 20 154 314.7 34 91 Changed HpaII restriction endonuclease
RE_LlaJI PF09563 Family 3 165 301.1 20 74.08 Changed LlaJI restriction endonuclease
RE_LlaMI PF09562 Family 3 8 251.9 47 94.51 Changed LlaMI restriction endonuclease
RE_MamI PF09567 Family 3 15 202 32 67.29 Changed MamI restriction endonuclease
RE_MjaI PF09568 Family 11 79 163.5 31 83.09 Changed MjaI restriction endonuclease
RE_NgoBV PF09564 Family 2 28 205.4 36 95.09 Changed NgoBV restriction endonuclease
RE_NgoFVII PF09565 Domain 13 215 213.3 16 63.78 Changed NgoFVII restriction endonuclease
RE_NgoPII PF09521 Family 8 48 243.7 41 92.95 Changed NgoPII restriction endonuclease
RE_R_Pab1 PF09522 Domain 2 14 104.5 41 53.24 Changed R.Pab1 restriction endonuclease
RE_SacI PF09566 Family 6 47 227.3 19 67.29 Changed SacI restriction endonuclease
RE_ScaI PF09569 Family 3 19 166.3 39 89.87 Changed ScaI restriction endonuclease
RE_SinI PF09570 Family 2 31 188.8 35 85.93 Changed SinI restriction endonuclease
RE_TaqI PF09573 Family 3 12 158.7 26 86 Changed TaqI restriction endonuclease
RE_TdeIII PF09520 Family 17 126 215.6 25 87.2 Changed Type II restriction endonuclease, TdeIII
RE_XamI PF09572 Family 6 74 233.4 31 78.53 Changed XamI restriction endonuclease
RE_XcyI PF09571 Family 3 25 244.1 29 85.01 Changed XcyI restriction endonuclease
RF-1 PF00472 Family 797 26336 114.5 37 37.29 Changed RF-1 domain
RF3_C PF16658 Domain 267 5681 128.5 39 24.4 Changed Class II release factor RF3, C-terminal domain
RFamide_26RFa PF11109 Family 14 154 105.6 45 68.99 Changed Orexigenic neuropeptide Qrfp/P518
RFC1 PF08519 Domain 138 2124 149.9 38 15.84 Changed Replication factor RFC1 C terminal domain
Rft-1 PF04506 Family 31 2311 404.2 27 90.4 Changed Rft protein
RFX1_trans_act PF04589 Family 15 1805 143.3 43 19.81 Changed RFX1 transcription activation region
RFX5_DNA_bdg PF14621 Domain 9 152 215.2 78 34.64 Changed RFX5 DNA-binding domain
RFX5_N PF18326 Domain 3 589 55.5 61 5.99 Changed RFX5 N-terminal domain
RFXA_RFXANK_bdg PF15289 Domain 4 263 115.1 64 47.95 Changed Regulatory factor X-associated C-terminal binding domain
RFX_DNA_binding PF02257 Domain 65 5502 77.7 46 8.69 Changed RFX DNA-binding domain
RGCC PF15151 Family 8 391 113.8 54 79.09 Changed Response gene to complement 32 protein family
RGI1 PF10843 Family 10 86 169.5 42 94.02 Changed Respiratory growth induced protein 1
RGI_lyase PF18370 Domain 73 1182 86.2 37 10.08 Changed Rhamnogalacturonan I lyases beta-sheet domain
RGM_C PF06534 Family 32 1172 168.2 49 40.22 Changed Repulsive guidance molecule (RGM) C-terminus
RGM_N PF06535 Family 26 1114 167.2 54 39.21 Changed Repulsive guidance molecule (RGM) N-terminus
RGP PF03214 Family 11 1320 280.1 60 88.9 Changed Reversibly glycosylated polypeptide
Rgp1 PF08737 Family 70 2108 242.8 24 50.86 Changed Rgp1
RgpF PF05045 Family 13 874 272.6 15 43.32 Changed Rhamnan synthesis protein F
RGS PF00615 Domain 54 25386 120.8 22 22.24 Changed Regulator of G protein signaling domain
RGS-like PF09128 Domain 6 2413 175 42 14.01 Changed Regulator of G protein signalling-like domain
RGS12_us1 PF16613 Disordered 6 610 113.6 64 10.3 Changed Unstructured region of RGS12
RGS12_us2 PF16611 Disordered 6 322 72.1 67 6.07 Changed Unstructured region between RBD and GoLoco
RGS12_usC PF16612 Disordered 11 477 131.6 33 11.38 Changed C-terminal unstructured region of RGS12
RGS_DHEX PF18148 Domain 4 3230 97.7 59 19.83 Changed Regulator of G-protein signalling DHEX domain
Rh5 PF18515 Coiled-coil 8 43 244.8 24 19.58 Changed Rh5 coiled-coil domain
RhaA PF06134 Domain 5 776 395.4 48 96.15 Changed L-rhamnose isomerase (RhaA)
Rhabdo_glycop PF00974 Family 4 155 459.8 18 82.56 Changed Rhabdovirus spike glycoprotein
Rhabdo_M1 PF03342 Family 1 4 210.5 39 93.66 Changed Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2 PF04785 Family 2 11 202 79 99.55 Changed Rhabdovirus matrix protein M2
Rhabdo_matrix PF03397 Family 1 4 168 46 86.38 Changed Rhabdovirus matrix protein
Rhabdo_ncap PF00945 Family 3 203 350.3 23 84.13 Changed Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2 PF03216 Family 13 125 256.4 16 66.13 Changed Rhabdovirus nucleoprotein
Rhabdo_NV PF02484 Family 1 2 111 51 100 Changed Rhabdovirus Non-virion protein
rhaM PF05336 Domain 245 3798 103.6 28 81.91 Changed L-rhamnose mutarotase
Rhamnogal_lyase PF06045 Family 4 1685 169 45 30.14 Changed Rhamnogalacturonate lyase family
Rhamno_transf PF11316 Family 10 564 217.9 23 74.62 Changed Putative rhamnosyl transferase
RhaT PF06379 Family 2 742 325.9 36 98.04 Changed L-rhamnose-proton symport protein (RhaT)
RHD3_GTPase PF05879 Domain 8 3594 201.3 32 19 Changed Root hair defective 3 GTP-binding protein (RHD3) GTPase domain
RHD_dimer PF16179 Domain 48 5487 99 38 11.26 Changed Rel homology dimerisation domain
RHD_DNA_bind PF00554 Domain 21 5665 162.2 39 19.08 Changed Rel homology DNA-binding domain
RhgB_N PF09284 Domain 52 692 238.9 43 45.75 Changed Rhamnogalacturonan lyase B, N-terminal
RHH_1 PF01402 Domain 30 6519 38.4 24 37.59 Changed Ribbon-helix-helix protein, copG family
RHH_3 PF12651 Domain 15 348 41.7 26 48.62 Changed Ribbon-helix-helix domain
RHH_4 PF13467 Domain 117 1897 66 38 69.72 Changed Ribbon-helix-helix domain
RHH_5 PF07878 Domain 13 387 40.7 26 55.22 Changed CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5
RHH_6 PF16762 Domain 9 84 75 46 92.24 Changed Ribbon-helix-helix domain
RHH_7 PF16777 Domain 2 8 63 35 80.13 Changed Transcriptional regulator, RHH-like, CopG
RHH_8 PF17723 Domain 7 436 115.9 59 85.12 Changed Ribbon-Helix-Helix transcriptional regulator family
RHH_9 PF19839 Domain 3 227 58.5 53 86.07 Changed Ribbon-helix-helix protein
RHIM PF12721 Motif 28 673 20.3 39 3.81 Changed RIP homotypic interaction motif
RHINO PF15319 Family 19 275 239.6 36 91.93 Changed RAD9, RAD1, HUS1-interacting nuclear orphan protein
RhlB PF12300 Family 2 63 158.8 42 28.93 Changed ATP-dependent RNA helicase RhlB
Rhodanese PF00581 Domain 141 77917 105.5 20 40.47 Changed Rhodanese-like domain
Rhodanese_C PF12368 Family 145 2887 67.5 36 17 Changed Rhodanase C-terminal
RhodobacterPufX PF11511 Family 5 58 65 33 83.93 Changed Intrinsic membrane protein PufX
Rhodopsin_N PF10413 Domain 5 775 35.8 77 10.29 Changed Amino terminal of the G-protein receptor rhodopsin
RhoGAP PF00620 Domain 83 54694 143.2 27 15.7 Changed RhoGAP domain
RhoGAP-FF1 PF16512 Domain 23 1015 79.6 44 5.34 Changed p190-A and -B Rho GAPs FF domain
RhoGAP_pG1_pG2 PF19518 Domain 22 1105 576 37 40.89 Changed p190RhoGAP, pG1 and pG2 domains
RhoGEF PF00621 Domain 157 56628 176 23 15.39 Changed RhoGEF domain
RhoGEF67_u1 PF16615 Disordered 14 1198 46.9 49 6.08 Changed Unstructured region one on RhoGEF 6 and 7
RhoGEF67_u2 PF16614 Disordered 4 1838 91.3 77 12.54 Changed Unstructured region two on RhoGEF 6 and 7
Rhomboid PF01694 Family 60 26179 148.5 22 44.34 Changed Rhomboid family
Rhomboid_2 PF20401 Domain 16 591 190.7 34 71.39 New Rhomboid-like protein
Rhomboid_N PF12122 Domain 15 385 83.9 29 29.86 Changed Cytoplasmic N-terminal domain of rhomboid serine protease
Rhomboid_SP PF12595 Family 9 1122 181.2 63 22.9 Changed Rhomboid serine protease
Rho_Binding PF08912 Coiled-coil 35 1788 66.4 55 5.07 Changed Rho Binding
Rho_GDI PF02115 Domain 34 3030 176.4 41 81.01 Changed RHO protein GDP dissociation inhibitor
Rho_N PF07498 Domain 104 8859 40.7 33 9.43 Changed Rho termination factor, N-terminal domain
Rho_RNA_bind PF07497 Domain 246 7592 74.9 51 14.94 Changed Rho termination factor, RNA-binding domain
RHS PF03527 Family 22 1252 36.2 35 3.41 Changed RHS protein
RHSP PF07999 Domain 3 1023 224.7 31 43.49 Changed Retrotransposon hot spot protein, P-loop domain
RHS_N PF20445 Domain 3 834 109.9 35 19.65 New Retrotransposon hot spot proteins N-terminal
RHS_repeat PF05593 Repeat 202 27069 37.7 30 8.3 Changed RHS Repeat
Rhv PF00073 Domain 49 295 139 15 10.26 Changed picornavirus capsid protein
Rib PF08428 Domain 78 697 75.4 29 18.82 Changed Rib domain
RIB43A PF05914 Family 59 1054 279.7 30 92.55 Changed RIB43A
RibD_C PF01872 Family 27 23680 186.1 20 72.98 Changed RibD C-terminal domain
RIBIOP_C PF04950 Family 185 4078 273.5 34 30.51 Changed 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
RibLong PF18957 Domain 40 616 95.6 28 21.59 Changed Long Rib domain
Ribonuclease PF00545 Domain 129 2298 84.6 34 48.64 Changed ribonuclease
Ribonuclease_3 PF00636 Family 229 12414 119.9 25 18.81 Changed Ribonuclease III domain
Ribonuclease_P PF00825 Family 87 7475 109.6 25 87.12 Changed Ribonuclease P
Ribonuclease_T2 PF00445 Domain 195 5588 175.3 23 62.42 Changed Ribonuclease T2 family
Ribonucleas_3_2 PF11469 Family 3 14 114.6 39 86.8 Changed Ribonuclease III
Ribonucleas_3_3 PF14622 Family 42 10336 128.9 34 38.38 Changed Ribonuclease-III-like
Ribonuc_2-5A PF06479 Family 153 3022 122.9 39 13.55 Changed Ribonuclease 2-5A
Ribonuc_L-PSP PF01042 Domain 25 29089 117 26 71.01 Changed Endoribonuclease L-PSP
Ribonuc_P_40 PF08584 Family 48 1280 232.1 27 69.15 Changed Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N PF08471 Family 58 2023 97.5 51 8.94 Changed Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC PF02867 Family 67 17644 420.5 26 63.08 Changed Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN PF00317 Domain 132 9838 76.4 32 9.66 Changed Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm PF00268 Domain 268 10533 265.9 30 76.79 Changed Ribonucleotide reductase, small chain
Ribophorin_I PF04597 Family 168 2117 394.1 34 78.46 Changed Ribophorin I
Ribophorin_II PF05817 Family 36 2300 410.1 27 90.01 Changed Oligosaccharyltransferase subunit Ribophorin II
Ribosomal_60s PF00428 Family 67 7635 88 33 49.01 Changed 60s Acidic ribosomal protein
Ribosomal_L1 PF00687 Domain 541 14564 196.5 33 72.41 Changed Ribosomal protein L1p/L10e family
Ribosomal_L10 PF00466 Family 111 13002 99.2 26 45.51 Changed Ribosomal protein L10
Ribosomal_L11 PF00298 Domain 635 12386 70 42 42.95 Changed Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N PF03946 Domain 250 12238 57.9 50 35.42 Changed Ribosomal protein L11, N-terminal domain
Ribosomal_L12 PF00542 Domain 328 10962 66.5 53 45.56 Changed Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L12_N PF16320 Domain 479 9724 51.8 39 36.8 Changed Ribosomal protein L7/L12 dimerisation domain
Ribosomal_L13 PF00572 Family 53 12444 114.9 43 67.72 Changed Ribosomal protein L13
Ribosomal_L13e PF01294 Family 99 2324 163.1 52 79.17 Changed Ribosomal protein L13e
Ribosomal_L14 PF00238 Domain 280 12460 119.8 51 89.92 Changed Ribosomal protein L14p/L23e
Ribosomal_L14e PF01929 Family 133 2134 74.1 41 41.38 Changed Ribosomal protein L14
Ribosomal_L15e PF00827 Family 86 2622 173.2 62 76.56 Changed Ribosomal L15
Ribosomal_L16 PF00252 Domain 441 12650 130.8 42 76.79 Changed Ribosomal protein L16p/L10e
Ribosomal_L17 PF01196 Family 560 9938 100.8 48 62.18 Changed Ribosomal protein L17
Ribosomal_L18 PF17135 Family 66 2889 157.8 53 81.44 Changed Ribosomal protein 60S L18 and 50S L18e
Ribosomal_L18A PF01775 Domain 60 2720 109 50 59.89 Changed Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Ribosomal_L18p PF00861 Family 15 9809 114.8 41 85.52 Changed Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Ribosomal_L18_c PF14204 Domain 135 2463 55.5 42 18.18 Changed Ribosomal L18 C-terminal region
Ribosomal_L19 PF01245 Family 381 9922 110.4 45 74.45 Changed Ribosomal protein L19
Ribosomal_L19e PF01280 Family 123 2869 134.1 60 42.33 Changed Ribosomal protein L19e
Ribosomal_L2 PF00181 Domain 26 11894 77.2 49 27.13 Changed Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20 PF00453 Family 339 9027 105.6 52 84.57 Changed Ribosomal protein L20
Ribosomal_L21e PF01157 Family 153 2907 94.5 55 58.69 Changed Ribosomal protein L21e
Ribosomal_L21p PF00829 Family 601 9807 100.2 38 72.79 Changed Ribosomal prokaryotic L21 protein
Ribosomal_L22 PF00237 Domain 702 12905 110.7 35 67.71 Changed Ribosomal protein L22p/L17e
Ribosomal_L22e PF01776 Family 90 2857 103.3 55 77.16 Changed Ribosomal L22e protein family
Ribosomal_L23 PF00276 Family 592 12725 82.9 34 64.32 Changed Ribosomal protein L23
Ribosomal_L23eN PF03939 Family 114 2356 50.9 55 28.43 Changed Ribosomal protein L23, N-terminal domain
ribosomal_L24 PF17136 Family 431 9045 65.1 42 53.73 Changed Ribosomal proteins 50S L24/mitochondrial 39S L24
Ribosomal_L24e PF01246 Domain 93 4300 62.7 46 35.19 Changed Ribosomal protein L24e
Ribosomal_L25p PF01386 Domain 622 7463 87.7 32 43.09 Changed Ribosomal L25p family
Ribosomal_L26 PF16906 Family 98 2569 110.5 58 71.45 Changed Ribosomal proteins L26 eukaryotic, L24P archaeal
Ribosomal_L27 PF01016 Family 345 9904 79.5 56 69.96 Changed Ribosomal L27 protein
Ribosomal_L27A PF00828 Family 465 12601 119.2 35 67.05 Changed Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Ribosomal_L27e PF01777 Family 80 2120 82.8 52 51.01 Changed Ribosomal L27e protein family
Ribosomal_L27_C PF18471 Domain 16 76 233 27 60.66 Changed Ribosomal L27 protein C-terminal domain
Ribosomal_L28 PF00830 Family 415 9946 59.5 36 61.04 Changed Ribosomal L28 family
Ribosomal_L28e PF01778 Family 209 3717 112.4 33 49 Changed Ribosomal L28e protein family
Ribosomal_L29 PF00831 Family 712 10590 56.8 40 64.36 Changed Ribosomal L29 protein
Ribosomal_L29e PF01779 Family 61 1728 39.3 69 36.53 Changed Ribosomal L29e protein family
Ribosomal_L2_C PF03947 Domain 373 12556 125.7 50 45.1 Changed Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3 PF00297 Family 7 13656 171 32 64.49 Changed Ribosomal protein L3
Ribosomal_L30 PF00327 Domain 759 12174 50.9 32 40.82 Changed Ribosomal protein L30p/L7e
Ribosomal_L30_N PF08079 Domain 138 3068 69.7 39 27.55 Changed Ribosomal L30 N-terminal domain
Ribosomal_L31 PF01197 Family 482 9454 70.7 45 88.02 Changed Ribosomal protein L31
Ribosomal_L31e PF01198 Family 82 2891 78.2 55 55.04 Changed Ribosomal protein L31e
Ribosomal_L32e PF01655 Family 148 2829 102.6 56 61.61 Changed Ribosomal protein L32
Ribosomal_L32p PF01783 Family 116 9431 55.4 35 71.86 Changed Ribosomal L32p protein family
Ribosomal_L33 PF00471 Family 333 9906 47.9 42 84.28 Changed Ribosomal protein L33
Ribosomal_L34 PF00468 Family 265 8100 43.8 57 71.33 Changed Ribosomal protein L34
Ribosomal_L34e PF01199 Family 89 2336 90.7 54 69.64 Changed Ribosomal protein L34e
Ribosomal_L35Ae PF01247 Domain 89 2343 92.8 53 65.64 Changed Ribosomal protein L35Ae
Ribosomal_L35p PF01632 Family 538 9086 60.7 41 76.86 Changed Ribosomal protein L35
Ribosomal_L36 PF00444 Domain 168 8091 38.3 58 75.48 Changed Ribosomal protein L36
Ribosomal_L36e PF01158 Family 77 2300 92.5 54 67.35 Changed Ribosomal protein L36e
Ribosomal_L37 PF08561 Family 76 1486 89.4 30 51.99 Changed Mitochondrial ribosomal protein L37
Ribosomal_L37ae PF01780 Family 98 2705 80 60 71.69 Changed Ribosomal L37ae protein family
Ribosomal_L37e PF01907 Family 79 2313 51.9 63 48.05 Changed Ribosomal protein L37e
Ribosomal_L38e PF01781 Family 81 1980 67.9 61 65.07 Changed Ribosomal L38e protein family
Ribosomal_L39 PF00832 Family 77 1907 41.1 65 52.54 Changed Ribosomal L39 protein
Ribosomal_L4 PF00573 Family 115 12647 196 32 75.65 Changed Ribosomal protein L4/L1 family
Ribosomal_L40e PF01020 Family 24 2003 46.3 65 28.16 Changed Ribosomal L40e family
Ribosomal_L41 PF05162 Family 6 293 24.6 84 22.62 Changed Ribosomal protein L41
Ribosomal_L44 PF00935 Family 74 2687 74.6 68 55.26 Changed Ribosomal protein L44
Ribosomal_L5 PF00281 Domain 490 11001 56.1 47 29.11 Changed Ribosomal protein L5
Ribosomal_L50 PF10501 Domain 45 862 106.4 20 33.69 Changed Ribosomal subunit 39S
Ribosomal_L5e PF17144 Family 94 3189 137.5 56 52.4 Changed Ribosomal large subunit proteins 60S L5, and 50S L18
Ribosomal_L5_C PF00673 Domain 386 11560 95.1 46 47.91 Changed ribosomal L5P family C-terminus
Ribosomal_L6 PF00347 Domain 91 22765 75.2 24 76.7 Changed Ribosomal protein L6
Ribosomal_L6e PF01159 Family 136 2626 103 45 41.14 Changed Ribosomal protein L6e
Ribosomal_L6e_N PF03868 Domain 42 1321 56.3 44 21.28 Changed Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae PF01248 Domain 51 16683 92.6 23 43.47 Changed Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C PF03948 Domain 819 8421 84.8 33 51.97 Changed Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N PF01281 Domain 527 9418 46.7 45 26.42 Changed Ribosomal protein L9, N-terminal domain
Ribosomal_S10 PF00338 Domain 343 12938 94 42 70.06 Changed Ribosomal protein S10p/S20e
Ribosomal_S11 PF00411 Family 7 12307 109.6 51 73.32 Changed Ribosomal protein S11
Ribosomal_S12 PF17487 Family 5 0 0 0 0 Changed Ribosomal protein S12
Ribosomal_S13 PF00416 Family 11 12062 104.3 45 79.49 Changed Ribosomal protein S13/S18
Ribosomal_S13_N PF08069 Domain 113 2449 58 61 35.17 Changed Ribosomal S13/S15 N-terminal domain
Ribosomal_S14 PF00253 Family 336 12097 52.7 43 55.2 Changed Ribosomal protein S14p/S29e
Ribosomal_S15 PF00312 Domain 605 12015 80.3 38 59.62 Changed Ribosomal protein S15
Ribosomal_S16 PF00886 Family 577 9725 60.7 47 49.03 Changed Ribosomal protein S16
Ribosomal_S17 PF00366 Domain 531 12173 67.8 44 58.47 Changed Ribosomal protein S17
Ribosomal_S17e PF00833 Family 40 2593 111.6 57 73.94 Changed Ribosomal S17
Ribosomal_S17_N PF16205 Family 62 2264 64.9 63 37.82 Changed Ribosomal_S17 N-terminal
Ribosomal_S18 PF01084 Family 340 11128 51.9 46 45.22 Changed Ribosomal protein S18
Ribosomal_S19 PF00203 Domain 299 11633 80.8 50 73.67 Changed Ribosomal protein S19
Ribosomal_S19e PF01090 Family 150 2639 129.5 48 76.69 Changed Ribosomal protein S19e
Ribosomal_S2 PF00318 Family 367 15891 157 34 69.11 Changed Ribosomal protein S2
Ribosomal_S20p PF01649 Family 626 8193 82.5 40 90.26 Changed Ribosomal protein S20
Ribosomal_S21 PF01165 Family 320 8509 54.7 38 62.42 Changed Ribosomal protein S21
Ribosomal_S21e PF01249 Family 61 2012 75.9 56 59.92 Changed Ribosomal protein S21e
Ribosomal_S22 PF08136 Family 2 33 43 62 87.17 Changed 30S ribosomal protein subunit S22 family
Ribosomal_S24e PF01282 Family 141 3040 78.6 54 54.21 Changed Ribosomal protein S24e
Ribosomal_S25 PF03297 Family 66 2321 95 52 68.02 Changed S25 ribosomal protein
Ribosomal_S26e PF01283 Family 32 2487 102.1 61 73.53 Changed Ribosomal protein S26e
Ribosomal_S27 PF01599 Domain 59 2184 45 63 24.38 Changed Ribosomal protein S27a
Ribosomal_S27e PF01667 Family 7 3151 54 70 52.41 Changed Ribosomal protein S27
Ribosomal_S28e PF01200 Family 40 2067 60.8 65 53.05 Changed Ribosomal protein S28e
Ribosomal_S30 PF04758 Family 31 1810 56.8 63 51.25 Changed Ribosomal protein S30
Ribosomal_S30AE PF02482 Family 756 9683 94.4 25 58.07 Changed Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae PF01015 Family 129 2939 183.6 55 74.93 Changed Ribosomal S3Ae family
Ribosomal_S3_C PF00189 Domain 231 10741 82.8 52 33.12 Changed Ribosomal protein S3, C-terminal domain
Ribosomal_S4 PF00163 Family 392 12082 93.5 32 46.41 Changed Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e PF00900 Family 161 2967 72.9 59 27.48 Changed Ribosomal family S4e
Ribosomal_S4Pg PF11993 Family 13 161 159.8 25 94.68 Changed Ribosomal S4P (gammaproteobacterial)
Ribosomal_S5 PF00333 Domain 345 12866 64.4 46 27.18 Changed Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 Domain 454 12932 70.6 41 29.55 Changed Ribosomal protein S5, C-terminal domain
Ribosomal_S6 PF01250 Domain 719 9884 90.1 30 70.15 Changed Ribosomal protein S6
Ribosomal_S6e PF01092 Family 101 2970 114.7 58 49.07 Changed Ribosomal protein S6e
Ribosomal_S7 PF00177 Domain 407 12546 146.7 40 79.79 Changed Ribosomal protein S7p/S5e
Ribosomal_S7e PF01251 Family 62 2529 167.1 53 73.64 Changed Ribosomal protein S7e
Ribosomal_S8 PF00410 Domain 402 11802 126.9 40 92.74 Changed Ribosomal protein S8
Ribosomal_S8e PF01201 Family 230 4427 190.8 36 81.72 Changed Ribosomal protein S8e
Ribosomal_S9 PF00380 Family 621 12364 122.1 45 68.93 Changed Ribosomal protein S9/S16
Ribosomal_TL5_C PF14693 Domain 622 7105 84.8 28 40.16 Changed Ribosomal protein TL5, C-terminal domain
Ribosom_S12_S23 PF00164 Family 12 12215 110.2 55 78.65 Changed Ribosomal protein S12/S23
Ribosom_S30AE_C PF16321 Domain 314 5436 56.4 38 28.26 Changed Sigma 54 modulation/S30EA ribosomal protein C terminus
Ribos_L4_asso_C PF14374 Domain 88 2237 75.1 45 19.52 Changed 60S ribosomal protein L4 C-terminal domain
Ribo_biogen_C PF04034 Domain 173 1936 124 48 39.83 Changed Ribosome biogenesis protein, C-terminal
Ribul_P_3_epim PF00834 Domain 12 11627 191.8 45 85.28 Changed Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A PF06026 Family 468 6591 170 39 68.38 Changed Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse PF02267 Domain 27 811 203.5 35 77.11 Changed ADP-ribosyl cyclase
Rib_recp_KP_reg PF05104 Family 46 1386 142.9 40 11.72 Changed Ribosome receptor lysine/proline rich region
RIC1 PF07064 Family 68 1995 246.3 36 21.28 Changed RIC1
RIC3 PF15361 Family 26 1064 176.9 25 42.84 Changed Resistance to inhibitors of cholinesterase homologue 3
Ric8 PF10165 Family 97 2289 395.8 32 82.28 Changed Guanine nucleotide exchange factor synembryn
RICH PF05062 Domain 25 4 78 40 20.46 Changed RICH domain
RicinB_lectin_2 PF14200 Domain 236 12801 80.1 22 28.32 Changed Ricin-type beta-trefoil lectin domain-like
Ricin_B_lectin PF00652 Domain 85 19009 120.7 21 20.16 Changed Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti PF05433 Family 77 4774 42.1 39 24.51 Changed Glycine zipper 2TM domain
RICTOR_M PF14666 Domain 97 1667 103.4 42 7.06 Changed Rapamycin-insensitive companion of mTOR, middle domain
RICTOR_N PF14664 Domain 95 1866 340 35 25.11 Changed Rapamycin-insensitive companion of mTOR, N-term
RICTOR_phospho PF14665 Domain 8 616 104.2 60 6.44 Changed Rapamycin-insensitive companion of mTOR, phosphorylation-site
RICTOR_V PF14668 Domain 93 1712 70.9 49 4.88 Changed Rapamycin-insensitive companion of mTOR, domain 5
Rieske PF00355 Domain 51 40266 95.2 21 29.26 Changed Rieske [2Fe-2S] domain
Rieske_2 PF13806 Domain 39 3895 104.3 31 40.85 Changed Rieske-like [2Fe-2S] domain
Rieske_3 PF18465 Domain 19 155 93.9 48 11.37 Changed Rieske 3Fe-4S
Rif1_N PF12231 Family 65 1436 320.4 26 18.45 Changed Rap1-interacting factor 1 N terminal
RIF5_SNase_1 PF18187 Domain 2 7 158.6 48 11.88 Changed TbRIF5 SNase domain 1
RIF5_SNase_2 PF18189 Domain 2 7 163.6 41 12.26 Changed TbRIF5 SNase domain 2
RIFIN PF02009 Family 112 1782 256.8 35 82.29 Changed Rifin
RIG-I_C PF18119 Domain 17 1255 136.7 36 16.02 Changed RIG-I receptor C-terminal domain
RIG-I_C-RD PF11648 Domain 63 1339 112.7 32 13.31 Changed C-terminal domain of RIG-I
RIH_assoc PF08454 Repeat 63 4967 112.9 53 3.25 Changed RyR and IP3R Homology associated
RIIa PF02197 Domain 12 3168 37.3 34 9.19 Changed Regulatory subunit of type II PKA R-subunit
RII_binding_1 PF10522 Motif 7 644 19 42 2.08 Changed RII binding domain
RILP PF11461 Family 29 1375 65.1 43 18.06 Changed Rab interacting lysosomal protein
RimK PF08443 Domain 4 7891 165.3 25 34.42 Changed RimK-like ATP-grasp domain
Rimk_N PF18030 Domain 197 2262 93.8 48 27.84 Changed RimK PreATP-grasp domain
RimM PF01782 Domain 106 7795 83.7 25 43.15 Changed RimM N-terminal domain
RimP_N PF02576 Domain 30 7412 73.5 35 42.55 Changed RimP N-terminal domain
RinB PF06116 Family 2 106 48.5 67 89.3 Changed Transcriptional activator RinB
RINGv PF12906 Domain 21 14205 49.2 38 10.4 Changed RING-variant domain
RING_CBP-p300 PF06001 Domain 14 1787 39.9 82 1.72 Changed CREB-binding protein/p300, atypical RING domain
Ring_hydroxyl_A PF00848 Domain 42 9381 201.4 16 52.99 Changed Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B PF00866 Domain 21 2119 140.3 25 82.41 Changed Ring hydroxylating beta subunit
RINT1_TIP1 PF04437 Repeat 58 2066 451.4 23 62.1 Changed RINT-1 / TIP-1 family
RIO1 PF01163 Family 27 6939 168.2 30 40.93 Changed RIO1 family
Rio2_N PF09202 Domain 26 1970 81.3 50 18.05 Changed Rio2, N-terminal
RIP PF00161 Domain 36 1251 177 17 48.92 Changed Ribosome inactivating protein
Ripply PF14998 Family 26 560 78 49 55.7 Changed Transcription Regulator
RisS_PPD PF16524 Domain 28 404 107.3 41 23.51 Changed Periplasmic domain of Sensor histidine kinase RisS
Rit1_C PF17184 Domain 107 1205 240.5 41 52.64 Changed Rit1 N-terminal domain
RITA PF17066 Family 9 176 226.1 49 91.88 Changed RBPJ-interacting and tubulin associated protein
RIX1 PF08167 Repeat 88 1508 182.5 21 21.98 Changed rRNA processing/ribosome biogenesis
RKP_N PF19322 Domain 30 184 134.2 52 11.23 Changed E3 ubiquitin-protein ligase RKP N-terminus
RL PF17797 Domain 14 336 70.5 53 12.83 Changed RL domain
RL10P_insert PF17777 Domain 21 4254 71.6 41 24.22 Changed Insertion domain in 60S ribosomal protein L10P
RL11D PF11088 Family 2 3 96.7 54 91.48 Changed Glycoprotein encoding membrane proteins RL5A and RL6
RLAN PF14401 Family 62 700 149.4 32 30.55 Changed RimK-like ATPgrasp N-terminal domain
RlaP PF10127 Family 24 2339 217.9 22 80.71 Changed RNA repair pathway DNA polymerase beta family
RLI PF04068 Family 68 3568 33.1 41 7.2 Changed Possible Fer4-like domain in RNase L inhibitor, RLI
RLL PF10036 Family 42 754 209.3 44 85.7 Changed RNA transcription, translation and transport factor protein
RlmM_FDX PF18125 Domain 11 675 70.2 42 19.63 Changed RlmM ferredoxin-like domain
RloB PF13707 Domain 110 1008 179.5 20 85.98 Changed RloB-like protein
RME-8_N PF19432 Domain 34 2125 474.6 29 34.88 Changed DNAJ protein RME-8 N-terminal
RMF PF04957 Family 22 500 53.4 52 81.68 Changed Ribosome modulation factor
RMI1_C PF16099 Family 22 702 134.4 27 22.71 Changed Recq-mediated genome instability protein 1, C-terminal OB-fold
RMI1_N PF08585 Domain 99 2693 149.7 26 30.09 Changed RecQ mediated genome instability protein
RMI2 PF16100 Family 25 550 113.9 34 58.68 Changed RecQ-mediated genome instability protein 2
RmlD_sub_bind PF04321 Domain 22 11034 273.3 26 83.47 Changed RmlD substrate binding domain
RMMBL PF07521 Motif 84 15389 62.8 23 10.49 Changed Zn-dependent metallo-hydrolase RNA specificity domain
RMP PF14996 Family 19 420 136.4 44 63.05 Changed Retinal Maintenance
RmuC PF02646 Family 286 5185 289.7 27 66.15 Changed RmuC family
RNA12 PF10443 Family 17 1053 321 30 49.67 Changed RNA12 protein
RnaseA PF00074 Domain 140 1876 114.1 27 69.8 Changed Pancreatic ribonuclease
RNaseH_C PF09293 Domain 2 120 117.2 36 40.41 Changed T4 RNase H, C terminal
RNaseH_like PF04308 Family 52 626 145.1 36 87.41 Changed Ribonuclease H-like
RNaseH_pPIWI_RE PF13032 Domain 42 258 271.1 20 30.14 Changed RNaseH domain of pPIWI_RE
RNase_3_N PF18497 Domain 40 94 105.7 22 19.39 Changed Ribonuclease III N-terminal domain
RNAse_A_bac PF18431 Domain 30 339 112.8 25 26.67 Changed Bacterial CdiA-CT RNAse A domain
RNase_E_G PF10150 Family 501 9546 254 38 36.68 Changed Ribonuclease E/G family
RNase_H PF00075 Domain 23 18650 135.5 24 30.45 Changed RNase H
RNase_H2-Ydr279 PF09468 Domain 85 1641 159.9 24 46.75 Changed Ydr279p protein family (RNase H2 complex component) wHTH domain
RNase_H2_suC PF08615 Family 19 1466 131.4 26 66.02 Changed Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
RNase_HII PF01351 Family 11 10805 183.3 34 74.69 Changed Ribonuclease HII
RNase_H_2 PF13482 Domain 68 2708 169.8 21 29.25 Changed RNase_H superfamily
RNase_II_C_S1 PF18614 Domain 101 1037 61.3 33 12.77 Changed RNase II-type exonuclease C-terminal S1 domain
RNase_J_C PF17770 Domain 77 6318 100.8 28 17.84 Changed Ribonuclease J C-terminal domain
RNase_P-MRP_p29 PF01868 Family 201 1901 91.8 33 36.62 Changed Ribonuclease P/MRP, subunit p29
RNase_PH PF01138 Domain 145 33449 132.9 25 40.07 Changed 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 Domain 79 23794 68.2 24 18.59 Changed 3' exoribonuclease family, domain 2
RNase_P_p30 PF01876 Domain 40 2034 207.8 28 60.37 Changed RNase P subunit p30
RNase_P_pop3 PF08228 Family 5 416 146.7 23 51.78 Changed RNase P subunit Pop3
RNase_P_Rpp14 PF01900 Family 196 2221 109.3 25 57.96 Changed Rpp14/Pop5 family
RNase_T PF00929 Family 40 37364 160 19 36.48 Changed Exonuclease
RNase_Y_N PF12072 Coiled-coil 44 3657 193.4 30 37.86 Changed RNase Y N-terminal region
RNase_Zc3h12a PF11977 Domain 20 2991 145.4 49 21.38 Changed Zc3h12a-like Ribonuclease NYN domain
RNase_Zc3h12a_2 PF14626 Family 3 34 112.3 28 21.82 Changed Zc3h12a-like Ribonuclease NYN domain
RNA_bind PF08675 Domain 10 678 76.5 70 12.96 Changed RNA binding domain
RNA_binding PF01877 Family 93 483 112.9 26 76.68 Changed RNA binding
RNA_capsid PF03035 Family 34 1 211 100 99.53 Changed Calicivirus putative RNA polymerase/capsid protein
RNA_helicase PF00910 Domain 99 1017 99 20 8.06 Changed RNA helicase
RNA_ligase PF09414 Family 149 1828 180.9 19 47.31 Changed RNA ligase
RNA_lig_T4_1 PF09511 Family 124 1297 219.7 33 32.74 Changed RNA ligase
RNA_Me_trans PF04252 Family 90 814 194.8 47 81.4 Changed Predicted SAM-dependent RNA methyltransferase
RNA_pol PF00940 Family 190 3154 385.8 41 39.7 Changed DNA-dependent RNA polymerase
RNA_polI_A14 PF08203 Family 24 86 111.6 28 65.28 Changed Yeast RNA polymerase I subunit RPA14
RNA_polI_A34 PF08208 Family 73 987 216.2 18 54.14 Changed DNA-directed RNA polymerase I subunit RPA34.5
RNA_pol_3_Rpc31 PF11705 Family 89 1674 179.7 24 76.65 Changed DNA-directed RNA polymerase III subunit Rpc31
RNA_pol_A_bac PF01000 Domain 59 12299 122.2 29 36.76 Changed RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD PF03118 Domain 59 8908 65.9 44 19.85 Changed Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_inhib PF16857 Domain 11 108 45.9 52 78.3 Changed RNA polymerase inhibitor
RNA_pol_I_A49 PF06870 Family 104 1767 329.7 20 82 Changed A49-like RNA polymerase I associated factor
RNA_pol_I_TF PF04090 Family 10 527 169.7 20 39.41 Changed RNA polymerase I specific initiation factor
RNA_pol_L PF01193 Domain 380 12371 212.6 28 64.47 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2 PF13656 Domain 239 3698 73.7 38 48.66 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD PF02150 Domain 9 3097 36.3 35 23.25 Changed RNA polymerases M/15 Kd subunit
RNA_pol_N PF01194 Domain 98 1865 57.6 63 69.06 Changed RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25 PF08292 Domain 23 1775 113.6 36 50.46 Changed RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4 PF06883 Domain 116 1760 58.5 42 5.22 Changed RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1 PF04997 Domain 25 14761 333.8 33 24.41 Changed RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 Domain 19 21288 113.5 36 11.5 Changed RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 Domain 112 14837 164.1 24 11.63 Changed RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 Domain 106 14431 96.3 27 6.79 Changed RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 Domain 24 16229 464.9 26 35.81 Changed RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6 PF04992 Domain 117 2061 176.4 40 10.7 Changed RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7 PF04990 Domain 70 2015 132.1 48 7.9 Changed RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R PF05001 Repeat 81 24697 14 79 14.79 Changed RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1 PF04563 Family 13 14475 412.8 21 34.81 Changed RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 Domain 22 19647 142.3 20 16.37 Changed RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 Domain 99 14593 67 50 5.6 Changed RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 Domain 244 4528 61.9 43 5.51 Changed RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_45 PF10385 Domain 621 7898 67.2 43 5.29 Changed RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_5 PF04567 Domain 140 4490 49.7 41 4.43 Changed RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 Domain 68 15955 399.6 37 35.8 Changed RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 Domain 45 14558 84.5 46 7.15 Changed RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4 PF03874 Family 48 3687 112.5 23 62.76 Changed RNA polymerase Rpb4
RNA_pol_Rpb5_C PF01191 Domain 142 2796 70.4 55 32.8 Changed RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N PF03871 Domain 130 2387 90.3 36 38.82 Changed RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6 PF01192 Family 342 9637 55.9 31 53.82 Changed RNA polymerase Rpb6
RNA_pol_Rpb8 PF03870 Family 112 1964 127.6 41 85.26 Changed RNA polymerase Rpb8
RNA_pol_RpbG PF16992 Family 8 29 115.6 29 96.16 Changed DNA-directed RNA polymerase, subunit G
RNA_pol_Rpc34 PF05158 Family 14 2257 241.8 25 88.07 Changed RNA polymerase Rpc34 subunit
RNA_pol_Rpc4 PF05132 Family 163 1938 129.3 26 30.52 Changed RNA polymerase III RPC4
RNA_pol_Rpc82 PF05645 Family 29 1615 229.9 18 41.67 Changed RNA polymerase III subunit RPC82
RNA_pol_Rpo13 PF12136 Domain 7 19 43.5 40 43.41 Changed RNA polymerase Rpo13 subunit HTH domain
RNA_replicase_B PF03431 Family 5 15 464.3 32 82.75 Changed RNA replicase, beta-chain
RNB PF00773 Domain 54 15506 308.3 30 37.31 Changed RNB domain
Rnf-Nqr PF02508 Family 622 7615 189.8 35 90.57 Changed Rnf-Nqr subunit, membrane protein
RNF111_N PF15303 Family 8 1099 240.5 44 34.82 Changed E3 ubiquitin-protein ligase Arkadia N-terminus
RNF152_C PF19325 Family 6 292 119.2 74 65.39 Changed E3 ubiquitin-protein ligase RNF152 C-terminus
RNF180_C PF19332 Family 9 318 95.1 61 18.88 Changed E3 ubiquitin-protein ligase RNF180 C-terminus
RNF220 PF15926 Family 7 1223 174.6 36 45 Changed E3 ubiquitin-protein ligase RNF220
RnfC_N PF13375 Domain 47 2741 95.9 34 18.87 Changed RnfC Barrel sandwich hybrid domain
RNHCP PF12647 Domain 51 537 87.8 45 42.97 Changed RNHCP domain
Rnk_N PF14760 Domain 81 993 40.7 36 27.75 Changed Rnk N-terminus
RnlA-toxin_DBD PF19034 Domain 7 46 122.2 24 32.05 Changed RNase LS, bacterial toxin DBD domain
RnlA_toxin PF15935 Domain 7 34 85.5 20 22.61 Changed RNase LS, bacterial toxin
RnlA_toxin_N PF19417 Domain 19 35 80 24 26.36 Changed RNase LS, bacterial toxin N-terminal
RnlB_antitoxin PF15933 Family 9 54 92.6 23 78.13 Changed Antitoxin to bacterial toxin RNase LS or RnlA
RNPP_C PF18768 Repeat 4 286 201.1 19 68.02 Changed RNPP family C-terminal domain
RNR_Alpha PF17975 Domain 33 393 88.7 40 12.72 Changed Ribonucleotide reductase alpha domain
RNR_inhib PF08591 Family 40 504 105.5 31 41.76 Changed Ribonucleotide reductase inhibitor
RNR_N PF08343 Family 113 1617 81 45 11.51 Changed Ribonucleotide reductase N-terminal
Robl_LC7 PF03259 Domain 37 9334 89.6 27 63.56 Changed Roadblock/LC7 domain
Roc PF08477 Domain 164 5101 106.9 21 11.07 Changed Ras of Complex, Roc, domain of DAPkinase
Rod-binding PF10135 Family 249 2804 49.5 27 24.11 Changed Rod binding protein
Rod_C PF10493 Family 15 937 420.8 25 35.66 Changed Rough deal protein C-terminal region
Rod_cone_degen PF15201 Family 3 111 49 61 83.24 Changed Progressive rod-cone degeneration
ROF PF07073 Family 30 311 76.7 35 89.18 Changed Modulator of Rho-dependent transcription termination (ROF)
Rogdi_lz PF10259 Family 85 1215 252.4 26 78.19 Changed Rogdi leucine zipper containing protein
ROH1-like PF05633 Family 6 1238 269.3 30 82.46 Changed Protein ROH1-like
ROK PF00480 Family 11 33024 274.2 23 78.27 Changed ROK family
ROKNT PF08067 Domain 7 916 40.9 78 10.22 Changed ROKNT (NUC014) domain
RolB_RolC PF02027 Family 13 53 172.2 16 67.68 Changed RolB/RolC glucosidase family
Rol_Rep_N PF18106 Domain 16 340 90.2 37 24.19 Changed Rolling Circle replication initiation protein N-terminal domain
Romo1 PF10247 Family 56 1427 64 46 55.3 Changed Reactive mitochondrial oxygen species modulator 1
rOmpB PF12334 Family 2 2 220 64 13.34 Changed Rickettsia outer membrane protein B
Rootletin PF15035 Family 30 1256 169.7 41 9.73 Changed Ciliary rootlet component, centrosome cohesion
Root_cap PF06830 Family 36 1226 56.5 52 15.6 Changed Root cap
Rop PF01815 Domain 4 43 53.7 66 85.14 Changed Rop protein
Rop-like PF05082 Family 53 344 63.5 40 90.29 Changed Rop-like
ROQ_II PF18386 Domain 4 1156 55.8 88 5.44 Changed Roquin II domain
Rossmann-like PF10727 Domain 5 2180 120.7 36 41.13 Changed Rossmann-like domain
ROS_MUCR PF05443 Family 193 2300 120.8 44 75.68 Changed ROS/MUCR transcriptional regulator protein
Rot1 PF10681 Family 62 641 196.2 41 82.05 Changed Chaperone for protein-folding within the ER, fungal
Rotamase PF00639 Domain 38 8960 97.3 24 31.06 Changed PPIC-type PPIASE domain
Rotamase_2 PF13145 Domain 101 4257 122.7 16 27.24 Changed PPIC-type PPIASE domain
Rotamase_3 PF13616 Domain 16 10763 110 30 30 Changed PPIC-type PPIASE domain
Rotavirus_VP1 PF12289 Domain 2 14 310.2 58 28.59 Changed Rotavirus VP1 C-terminal domain
Rotavirus_VP3 PF06929 Family 2 19 600.1 56 90.51 Changed Rotavirus VP3 protein
Rotavirus_VP7 PF05868 Family 3 11 249.5 33 98.95 Changed Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6 PF00980 Family 2 19 394.3 63 99.77 Changed Rotavirus major capsid protein VP6
Rota_NS26 PF01525 Family 3 19 200.1 52 99.63 Changed Rotavirus NS26
Rota_NS35 PF02509 Family 2 19 311.7 57 99.75 Changed Rotavirus non-structural protein 35
Rota_NS53 PF00981 Family 14 14 425.7 41 92.13 Changed Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6 PF04866 Family 1 7 92.4 65 97.44 Changed Rotavirus non-structural protein 6
Rota_NSP3 PF01665 Family 2 19 273.4 48 81.71 Changed Rotavirus non-structural protein NSP3
Rota_NSP4 PF01452 Family 1 13 172.1 72 98.89 Changed Rotavirus non structural protein
Rota_VP2 PF05087 Family 2 19 732.1 62 99.8 Changed Rotavirus VP2 protein
Rota_VP4_MID PF17477 Domain 2 22 190.1 47 27.91 Changed Rotavirus VP4 membrane interaction domain
Roughex PF06020 Family 2 23 262.4 34 91.3 Changed Drosophila roughex protein
Rox3 PF08633 Family 58 523 199.3 34 54.14 Changed Rox3 mediator complex subunit
ROXA-like_wH PF20514 Domain 24 1534 116.5 20 29.15 New ROXA-like winged helix
RP-C PF03428 Domain 36 1117 168.5 33 42.68 Changed Replication protein C N-terminal domain
RP-C_C PF11800 Family 34 995 101 34 25.8 Changed Replication protein C C-terminal region
RP1-2 PF12042 Domain 17 37 161.7 36 38.73 Changed Tubuliform egg casing silk strands structural domain
RP853 PF17542 Family 2 5 280.8 42 97.16 Changed Uncharacterized RP853
RP854 PF17460 Family 1 6 169.3 49 99.51 Changed Uncharacterized protein RP854
RPA PF10134 Family 20 1488 223.8 36 65.74 Changed Replication initiator protein A
RPA43_OB PF17875 Domain 64 1148 137.9 23 36.9 Changed RPA43 OB domain in RNA Pol I
RPAP1_C PF08620 Family 98 1654 69.3 44 6.6 Changed RPAP1-like, C-terminal
RPAP1_N PF08621 Family 118 1601 45.2 36 4.48 Changed RPAP1-like, N-terminal
RPAP2_Rtr1 PF04181 Family 117 1560 75.4 35 15.42 Changed Rtr1/RPAP2 family
RPAP3_C PF13877 Domain 123 1885 91.7 25 17.49 Changed Potential Monad-binding region of RPAP3
RPA_C PF08784 Domain 15 1969 101.4 20 36.1 Changed Replication protein A C terminal
RPA_interact_C PF14768 Family 66 771 79.7 32 33.76 Changed Replication protein A interacting C-terminal
RPA_interact_M PF14767 Family 22 639 77.1 34 34.06 Changed Replication protein A interacting middle
RPA_interact_N PF14766 Family 33 705 39.7 45 17.36 Changed Replication protein A interacting N-terminal
RPC5 PF04801 Family 47 2362 281.1 20 64.27 Changed RPC5 protein
RPC5_C PF19725 Domain 27 539 232.5 58 35.92 Changed DNA-directed RNA polymerase III subunit RPC5 C-terminal
RPE65 PF03055 Repeat 494 9447 430.9 23 88.19 Changed Retinal pigment epithelial membrane protein
RPEL PF02755 Disordered 123 13346 23.8 44 8.4 Changed RPEL repeat
Rpf1_C PF11574 Domain 12 105 85.1 29 37.97 Changed Resuscitation-promoting factor Rpf1, C-terminal
RPGR1_C PF18111 Domain 7 814 153.9 41 14.21 Changed Retinitis pigmentosa G-protein regulator interacting C-terminal
RPM2 PF08579 Repeat 5 86 119.3 32 10.35 Changed Mitochondrial ribonuclease P subunit (RPM2)
RPN13_C PF16550 Domain 49 1558 114.6 33 30.43 Changed UCH-binding domain
RPN1_C PF18051 Domain 40 2145 53.1 71 6.18 Changed 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
RPN1_RPN2_N PF17781 Domain 19 2590 264.3 41 32.74 Changed RPN1 N-terminal domain
RPN2_C PF18004 Domain 84 2230 149.4 37 16.53 Changed 26S proteasome regulatory subunit RPN2 C-terminal domain
Rpn3_C PF08375 Family 62 1906 64.8 55 12.37 Changed Proteasome regulatory subunit C-terminal
RPN5_C PF18098 Domain 37 1805 32.4 50 7 Changed 26S proteasome regulatory subunit RPN5 C-terminal domain
RPN6_C_helix PF18503 Domain 75 1766 26.7 53 6.22 Changed 26S proteasome subunit RPN6 C-terminal helix domain
RPN6_N PF18055 Repeat 115 2094 113.4 40 26.63 Changed 26S proteasome regulatory subunit RPN6 N-terminal domain
RPN7 PF10602 Repeat 55 4002 171.2 31 38.78 Changed 26S proteasome subunit RPN7
Rpn9_C PF18261 Family 36 547 32.9 60 8.64 Changed Rpn9 C-terminal helix
rpo132 PF12415 Family 8 38 31.8 54 2.74 Changed Poxvirus DNA dependent RNA polymerase
rpo30_N PF12410 Family 9 39 132.8 58 58.98 Changed Poxvirus DNA dependent RNA polymerase 30kDa subunit
RPOL_N PF14700 Domain 171 2721 287.8 22 27.39 Changed DNA-directed RNA polymerase N-terminal
RpoY PF07288 Domain 40 574 67.8 48 96.22 Changed RNA polymerase epsilon subunit
Rpp20 PF12328 Family 39 840 126.3 30 64.96 Changed Rpp20 subunit of nuclear RNase MRP and P
Rpr2 PF04032 Family 271 2099 101.8 23 46.94 Changed RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPS31 PF17067 Family 1 402 84.8 43 72.56 Changed Ribosomal protein S31e
RPT PF13446 Domain 159 1817 58.5 23 12 Changed A repeated domain in UCH-protein
RPW8 PF05659 Family 13 1020 130.5 24 22.22 Changed Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC PF09382 Domain 99 8835 114 24 14.22 Changed RQC domain
RraA-like PF03737 Family 353 9950 156.3 27 67.6 Changed Aldolase/RraA
RraB PF06877 Domain 74 1135 100 23 66.7 Changed Regulator of ribonuclease activity B
RRF PF01765 Domain 780 10112 161.2 40 79.43 Changed Ribosome recycling factor
Rrf2 PF02082 Domain 99 16486 130.9 26 86.61 Changed Iron-dependent Transcriptional regulator
RRF_GI PF12614 Family 8 74 119.6 34 92.19 Changed Ribosome recycling factor
RRG8 PF17068 Family 5 35 240.2 22 87.92 Changed Required for respiratory growth protein 8 mitochondrial
RRM PF10378 Domain 13 451 60.2 46 7.26 Changed Putative RRM domain
RRM_1 PF00076 Domain 68 370166 67.4 23 22.58 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2 PF04059 Family 4 3048 92.4 52 14.11 Changed RNA recognition motif 2
RRM_3 PF08777 Domain 11 1566 100.5 28 21.14 Changed RNA binding motif
RRM_4 PF10598 Domain 34 1856 90.6 76 4.01 Changed RNA recognition motif of the spliceosomal PrP8
RRM_5 PF13893 Domain 6 7883 112.6 28 28.06 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_7 PF16367 Domain 11 3440 90.9 65 15.11 Changed RNA recognition motif
RRM_8 PF11835 Domain 10 5211 87.5 48 17.21 Changed RRM-like domain
RRM_9 PF18444 Domain 33 149 71.1 30 11.42 Changed RNA recognition motif
RRM_DME PF15628 Family 13 946 93.3 66 6.52 Changed RRM in Demeter
RRM_occluded PF16842 Domain 44 518 78.5 43 7.15 Changed Occluded RNA-recognition motif
RRM_Rrp7 PF17799 Domain 8 917 151.9 25 46.82 Changed Rrp7 RRM-like N-terminal domain
RRN3 PF05327 Family 99 2320 452 25 80.51 Changed RNA polymerase I specific transcription initiation factor RRN3
Rrn6 PF10214 Family 47 681 643 15 77.98 Changed RNA polymerase I-specific transcription-initiation factor
RRN9 PF10680 Domain 46 415 72.7 34 11.69 Changed RNA polymerase I specific transcription initiation factor
RrnaAD PF00398 Domain 11 13367 246.8 28 80.69 Changed Ribosomal RNA adenine dimethylase
rRNA_methylase PF06962 Family 168 1539 135.8 36 66.29 Changed Putative rRNA methylase
rRNA_proc-arch PF13234 Domain 249 4798 235.9 21 22.84 Changed rRNA-processing arch domain
rRNA_processing PF08524 Domain 28 948 142.1 22 68.1 Changed rRNA processing
RRP14 PF15459 Family 50 1022 57.1 42 12.3 Changed 60S ribosome biogenesis protein Rrp14
Rrp15p PF07890 Family 138 1636 138.8 31 49.55 Changed Rrp15p
RRP36 PF06102 Family 159 1725 161.4 33 53.93 Changed rRNA biogenesis protein RRP36
Rrp40_N PF18311 Domain 24 616 50.5 38 19.86 Changed Exosome complex exonuclease Rrp40 N-terminal domain
Rrp44_CSD1 PF17216 Domain 1 2838 119.1 31 12.52 Changed Rrp44-like cold shock domain
Rrp44_S1 PF17215 Domain 60 1992 84.7 31 9.15 Changed S1 domain
RRP7 PF12923 Domain 39 1654 119.3 30 38.33 Changed Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
RRS1 PF04939 Family 143 1661 160.5 39 54.84 Changed Ribosome biogenesis regulatory protein (RRS1)
RRT14 PF17075 Family 12 76 184.7 30 93.64 Changed Regular of rDNA transcription protein 14
RRXRR PF14239 Family 53 795 158.1 37 43.1 Changed RRXRR protein
RR_TM4-6 PF06459 Family 42 2508 236.4 36 5.7 Changed Ryanodine Receptor TM 4-6
RS4NT PF08071 Domain 45 2680 35.6 68 13.26 Changed RS4NT (NUC023) domain
Rsa3 PF14615 Family 63 534 46 36 23.42 Changed Ribosome-assembly protein 3
RsaA_NTD PF19198 Domain 7 12 175.9 54 24.31 Changed RsaA N-terminal domain
RsbRD_N PF14361 Domain 111 1136 101.6 21 31.15 Changed RsbT co-antagonist protein rsbRD N-terminal domain
Rsbr_N PF08678 Domain 14 237 128.1 30 46.14 Changed Rsbr N terminal
RsbU_N PF08673 Domain 25 443 75.6 33 19.84 Changed Phosphoserine phosphatase RsbU, N-terminal domain
RSB_motif PF16294 Motif 22 1415 92 38 10.54 Changed RNSP1-SAP18 binding (RSB) motif
Rsc14 PF08586 Family 13 25 98.9 49 50.44 Changed RSC complex, Rsc14/Ldb7 subunit
RSD-2 PF07547 Domain 17 36 81.3 29 14.48 Changed RSD-2 N-terminal domain
RsdA_SigD_bd PF16751 Domain 16 236 46.2 41 13.84 Changed Anti-sigma-D factor RsdA to sigma factor binding region
Rsd_AlgQ PF04353 Family 44 542 147.4 37 92.94 Changed Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C PF03873 Domain 33 415 54.8 35 26.64 Changed Anti sigma-E protein RseA, C-terminal domain
RseA_N PF03872 Domain 28 1269 93.7 25 45.21 Changed Anti sigma-E protein RseA, N-terminal domain
RseC_MucC PF04246 Family 161 1541 129.7 22 87.24 Changed Positive regulator of sigma(E), RseC/MucC
RSF PF14876 Family 7 15 203.8 18 35.26 Changed Respiratory growth transcriptional regulator
RsfS PF02410 Family 786 9344 100.2 33 57.2 Changed Ribosomal silencing factor during starvation
RsgA_GTPase PF03193 Domain 60 8564 172.4 34 52.25 Changed RsgA GTPase
RsgA_N PF16745 Domain 57 2618 56.5 37 18.79 Changed RsgA N-terminal domain
RsgI_N PF12791 Family 45 449 51.7 22 13.19 Changed Anti-sigma factor N-terminus
RskA PF10099 Family 193 3889 191.8 18 75.11 Changed Anti-sigma-K factor rskA
Rsm1 PF08600 Domain 10 1155 89.6 24 19.6 Changed Rsm1-like
Rsm22 PF09243 Family 5 3247 210.4 20 52.84 Changed Mitochondrial small ribosomal subunit Rsm22
RsmF_methylt_CI PF17126 Domain 106 882 63.8 36 13.86 Changed RsmF rRNA methyltransferase first C-terminal domain
RsmJ PF04378 Domain 6 2230 240.9 36 84.76 Changed Ribosomal RNA large subunit methyltransferase D, RlmJ
RSN1_7TM PF02714 Family 75 10059 249.8 24 30.79 Changed Calcium-dependent channel, 7TM region, putative phosphate
RSN1_TM PF13967 Family 129 8791 153.1 23 17.91 Changed Late exocytosis, associated with Golgi transport
RSRP PF17069 Family 3 561 257.2 40 20.37 Changed Arginine/Serine-Rich protein 1
RSS_P20 PF11757 Domain 11 11 90.8 20 42.22 Changed Suppressor of RNA silencing P21-like N-terminal domain
RST PF12174 Domain 48 1705 64.9 31 11.08 Changed RCD1-SRO-TAF4 (RST) plant domain
RSV_NS2 PF03113 Family 1 3 124 85 100 Changed Respiratory synctial virus non-structural protein NS2
RTA1 PF04479 Family 250 8234 208.4 27 66.01 Changed RTA1 like protein
RTBV_P12 PF06361 Family 1 1 110 100 100 Changed Rice tungro bacilliform virus P12 protein
RTBV_P46 PF06216 Family 1 1 389 100 100 Changed Rice tungro bacilliform virus P46 protein
RTC PF01137 Domain 157 3711 313 26 85.15 Changed RNA 3'-terminal phosphate cyclase
RTC4 PF14474 Domain 98 987 114.2 27 22.41 Changed RTC4-like domain
RtcB PF01139 Family 247 6107 315 29 87.26 Changed tRNA-splicing ligase RtcB
RtcR PF06956 Family 32 377 180.5 49 34.21 Changed Regulator of RNA terminal phosphate cyclase
RTC_insert PF05189 Domain 237 2944 104.9 31 28.02 Changed RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC PF09357 Family 49 903 187.5 28 75.4 Changed RteC protein
Rtf2 PF04641 Family 18 2312 239.4 24 74.11 Changed Rtf2 RING-finger
RTP PF02334 Domain 9 104 115.2 49 94.99 Changed Replication terminator protein
RTP1_C1 PF10363 Family 121 1267 115.8 31 11.7 Changed Required for nuclear transport of RNA pol II C-terminus 1
RTP1_C2 PF10304 Family 62 857 33.6 37 3.41 Changed Required for nuclear transport of RNA pol II C-terminus 2
RTP801_C PF07809 Family 37 753 116 44 54.11 Changed RTP801 C-terminal region
Rtt102p PF09510 Family 9 41 129.6 27 54.61 Changed Rtt102p-like transcription regulator protein
Rtt106 PF08512 Domain 193 4637 90.5 28 11.86 Changed Histone chaperone Rttp106-like
Rtt106_N PF18215 Domain 18 43 46 32 10.33 Changed Histone chaperone Rtt106 N-terminal domain
RTT107_BRCT_5 PF16770 Domain 63 2754 96.7 27 9.15 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTT107_BRCT_6 PF16771 Domain 21 76 108.2 29 11.9 Changed Regulator of Ty1 transposition protein 107 BRCT domain
RTTN_N PF14726 Family 29 521 96.6 51 5.08 Changed Rotatin, an armadillo repeat protein, centriole functioning
RTX PF02382 Domain 7 22 278.9 32 24.77 Changed N-terminal domain in RTX protein
RtxA PF07634 Repeat 71 748 17.3 36 13.33 Changed RtxA repeat
RTX_C PF08339 Family 5 12 132.1 28 15.53 Changed RTX C-terminal domain
RT_RNaseH PF17917 Domain 118 16150 96.1 29 11.82 Changed RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 Domain 174 26244 89.1 29 11.43 Changed RNase H-like domain found in reverse transcriptase
Rua1_C PF14616 Domain 32 814 109.7 39 20.05 Changed Transcription regulator Rua1, C-terminal
Rubella_Capsid PF05750 Family 1 4 300 99 28.22 Changed Rubella capsid protein
Rubella_E1 PF05748 Family 1 4 496 99 46.66 Changed Rubella membrane glycoprotein E1
Rubella_E2 PF05749 Family 1 4 267 97 25.12 Changed Rubella membrane glycoprotein E2
Rubis-subs-bind PF09273 Domain 117 4179 128.5 18 26.06 Changed Rubisco LSMT substrate-binding
RuBisCo_chap_C PF18087 Domain 85 334 145.1 37 35.7 Changed Rubisco Assembly chaperone C-terminal domain
RuBisCO_large PF00016 Domain 16 2894 248.4 37 63.67 Changed Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N PF02788 Domain 37 2231 114.9 36 26.75 Changed Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small PF00101 Domain 82 2175 98.2 36 57.22 Changed Ribulose bisphosphate carboxylase, small chain
Rubi_NSP_C PF12601 Family 1 4 66 99 3.12 Changed Rubivirus non-structural protein
Rubredoxin PF00301 Domain 24 4993 46.3 49 30.57 Changed Rubredoxin
Rubredoxin_2 PF18073 Domain 32 8679 28 45 6.21 Changed Rubredoxin metal binding domain
Rubredoxin_C PF18267 Domain 32 5532 69.5 32 9.64 Changed Rubredoxin NAD+ reductase C-terminal domain
Rubrerythrin PF02915 Domain 38 7735 116.3 22 56.07 Changed Rubrerythrin
RUN PF02759 Family 35 13727 136.9 22 17.69 Changed RUN domain
Runt PF00853 Domain 21 2297 119.8 78 29.74 Changed Runt domain
RunxI PF08504 Family 5 1385 93.5 68 22.47 Changed Runx inhibition domain
RusA PF05866 Family 69 1574 115.4 21 77.37 Changed Endodeoxyribonuclease RusA
RuvA_C PF07499 Domain 79 7434 47.5 31 23.55 Changed RuvA, C-terminal domain
RuvA_N PF01330 Domain 730 7785 61.5 36 30.48 Changed RuvA N terminal domain
RuvB_C PF05491 Domain 28 7910 71.8 53 20.92 Changed RuvB C-terminal winged helix domain
RuvB_N PF05496 Domain 91 9563 153.6 52 42.86 Changed Holliday junction DNA helicase RuvB P-loop domain
RuvC PF02075 Domain 5 6948 147.6 40 82.79 Changed Crossover junction endodeoxyribonuclease RuvC
RuvC_1 PF18516 Domain 10 36 380.5 33 32.76 Changed RuvC nuclease domain
RuvC_III PF18541 Domain 55 651 141.3 25 12.71 Changed RuvC endonuclease subdomain 3
RuvX PF03652 Family 111 8451 133.1 33 85.93 Changed Holliday junction resolvase
Rv0078B PF18993 Family 8 37 55.7 27 65.13 Changed Rv0078B-related antitoxin
Rv2175c_C PF18367 Domain 36 1299 56.5 54 46.42 Changed Rv2175c C-terminal domain of unknown function
Rv2179c-like PF16473 Domain 27 1216 167.7 23 87.03 Changed 3'-5' exoribonuclease Rv2179c-like domain
Rv2632c-like PF08962 Family 33 833 81.3 39 83.51 Changed Rv2632c-like
Rv2949c-like PF01947 Domain 20 389 148.8 33 69.96 Changed Chorismate pyruvate-lyase Rv2949c-like
rve PF00665 Domain 69 45153 99.7 19 16.48 Changed Integrase core domain
rve_2 PF13333 Family 13 8690 54.1 30 22.43 Changed Integrase core domain
rve_3 PF13683 Domain 51 10300 63.5 27 30.22 Changed Integrase core domain
RVP PF00077 Domain 8 2204 97.2 21 12.42 Changed Retroviral aspartyl protease
RVP_2 PF08284 Domain 7 10295 0 0 0 Changed Retroviral aspartyl protease
RVT_1 PF00078 Domain 69 100689 170.6 15 25.35 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 Family 3 23657 151.2 24 23.2 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 Domain 24 22150 104.1 19 26.54 Changed Reverse transcriptase-like
RVT_connect PF06815 Domain 2 44 101.7 63 7.94 Changed Reverse transcriptase connection domain
RVT_N PF13655 Domain 95 1068 79 44 17.27 Changed N-terminal domain of reverse transcriptase
RVT_thumb PF06817 Domain 15 1327 62.9 50 8.43 Changed Reverse transcriptase thumb domain
RWD PF05773 Domain 114 9850 117.1 20 17.88 Changed RWD domain
RWP-RK PF02042 Family 80 3674 48.5 45 8.57 Changed RWP-RK domain
RXLR PF16810 Family 18 1372 129.3 16 79.59 Changed RXLR phytopathogen effector protein, Avirulence activity
RXLR_WY PF18634 Domain 46 261 51.1 31 23.91 Changed RXLR phytopathogen effector protein WY-domain
RXT2_N PF08595 Family 58 576 133.5 34 28.36 Changed RXT2-like, N-terminal
Rxt3 PF08642 Family 73 958 99.5 39 11.73 Changed Histone deacetylation protein Rxt3
Rx_N PF18052 Domain 457 27303 112.8 18 13.74 Changed Rx N-terminal domain
RYDR_ITPR PF01365 Repeat 52 9846 187.9 30 10.43 Changed RIH domain
RyR PF02026 Family 103 9927 87.8 37 7.64 Changed RyR domain
Rz1 PF06085 Family 6 60 41.5 49 61.25 Changed Lipoprotein Rz1 precursor
R_equi_Vir PF05526 Family 8 33 131.7 30 84.46 Changed Rhodococcus equi virulence-associated protein
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