Summary

This is the summary of UniProt entry YKOF_BACSU (O34911).

Description:

Putative HMP/thiamine-binding protein YkoF

Source organism:

Bacillus subtilis (strain 168) (NCBI taxonomy ID 224308)

Length:

200 amino acids

Reference Proteome:

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source	Domain	Start	End	Gathering threshold (bits)		Score (bits)		E-value
Source	Domain	Start	End	Sequence	Domain	Sequence	Domain	Sequence	Domain
Pfam	Ykof	10	89	21	21	255.6	125.8	7.5e-74	2.4e-33
disorder	n/a	95	99	n/a	n/a	n/a	n/a	n/a	n/a
Pfam	Ykof	114	194	21	21	255.6	128.9	7.5e-74	2.5e-34
disorder	n/a	181	200	n/a	n/a	n/a	n/a	n/a	n/a

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession O34911. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:

1

MEHICGTSRI AGFRFSLYPM TDDFISVIKS ALKKTDTSKV WTKTDHISTV

50

51

LRGSIDHVFD AAKAIYLHAA NSEQHIVMNG TFSIGCPGDT QGDTYLSKGD

100

101

KRVNEDAVRG LKAEAPCQFA LYPMNEPDYM GLIMEAVDIA KAQGTFVQGV

150

151

HYASELDGDA HDVFSTLEAV FRMAEQQTNH ITMTVNLSAN SPSRKNRKQG

200

201

200

Show the unformatted sequence.

Checksums:

CRC64:A75C6662174F9465

MD5:782d4fab07671493f0ce3297f62da428

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family	UniProt residues	PDB ID	PDB chain ID	PDB residues	View
Ykof	10 - 89	1S7H	A	10 - 89	Show 3D Structure View in InterPro
			B	10 - 89	Show 3D Structure View in InterPro
			C	10 - 89	Show 3D Structure View in InterPro
			D	10 - 89	Show 3D Structure View in InterPro
		1S99	A	10 - 89	Show 3D Structure View in InterPro
		1S99	B	10 - 89	Show 3D Structure View in InterPro
		1SBR	A	10 - 89	Show 3D Structure View in InterPro
		1SBR	B	10 - 89	Show 3D Structure View in InterPro
	114 - 192	1S7H	C	114 - 192	Show 3D Structure View in InterPro
		1S7H	D	114 - 192	Show 3D Structure View in InterPro
		1S99	B	114 - 192	Show 3D Structure View in InterPro
		1SBR	B	114 - 192	Show 3D Structure View in InterPro
	114 - 193	1S7H	A	114 - 193	Show 3D Structure View in InterPro
	114 - 193	1S7H	B	114 - 193	Show 3D Structure View in InterPro
	114 - 194	1S99	A	114 - 194	Show 3D Structure View in InterPro
	114 - 194	1SBR	A	114 - 194	Show 3D Structure View in InterPro

×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

	Very High (pLDDT > 90)
	Confident (90 > pLDDT > 70)
	Low (70 > pLDDT > 50)
	Very Low (pLDDT < 50)

Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;

Protein: YKOF_BACSU (O34911)