!!

Powering down the Pfam website
On October 5th, we will start redirecting the traffic from Pfam (pfam.xfam.org) to InterPro (www.ebi.ac.uk/interpro). The Pfam website will be available at legacy.pfam.xfam.org until January 2023, when it will be decommissioned. You can read more about the sunset period in our blog post.

Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
5  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: ARCA_PSEAE (P13981)

Summary

This is the summary of UniProt entry ARCA_PSEAE (P13981).

Description: Arginine deiminase EC=3.5.3.6
Source organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (NCBI taxonomy ID 208964)
Length: 418 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
disorder n/a 2 5
Pfam ADI 38 413
disorder n/a 221 224

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession P13981. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MSTEKTKLGV HSEAGKLRKV MVCSPGLAHQ RLTPSNCDEL LFDDVIWVNQ
50
51
AKRDHFDFVT KMRERGIDVL EMHNLLTETI QNPEALKWIL DRKITADSVG
100
101
LGLTSELRSW LESLEPRKLA EYLIGGVAAD DLPASEGANI LKMYREYLGH
150
151
SSFLLPPLPN TQFTRDTTCW IYGGVTLNPM YWPARRQETL LTTAIYKFHP
200
201
EFANAEFEIW YGDPDKDHGS STLEGGDVMP IGNGVVLIGM GERSSRQAIG
250
251
QVAQSLFAKG AAERVIVAGL PKSRAAMHLD TVFSFCDRDL VTVFPEVVKE
300
301
IVPFSLRPDP SSPYGMNIRR EEKTFLEVVA ESLGLKKLRV VETGGNSFAA
350
351
EREQWDDGNN VVCLEPGVVV GYDRNTYTNT LLRKAGVEVI TISASELGRG
400
401
RGGGHCMTCP IVRDPIDY                                   
418
 

Show the unformatted sequence.

Checksums:
CRC64:D6288249D1B45AB8
MD5:82183a849d66c5a9efbc74505e599aa7

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe SIFTS project, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between Pfam domains, this UniProt entry and a corresponding three dimensional structure.

Pfam family UniProt residues PDB ID PDB chain ID PDB residues View
ADI 38 - 413 1RXX A 38 - 413 Show 3D Structure View in InterPro
B 38 - 413 Show 3D Structure View in InterPro
C 38 - 413 Show 3D Structure View in InterPro
D 38 - 413 Show 3D Structure View in InterPro
2A9G A 38 - 413 Show 3D Structure View in InterPro
B 38 - 413 Show 3D Structure View in InterPro
C 38 - 413 Show 3D Structure View in InterPro
D 38 - 413 Show 3D Structure View in InterPro
2AAF A 38 - 413 Show 3D Structure View in InterPro
B 38 - 413 Show 3D Structure View in InterPro
C 38 - 413 Show 3D Structure View in InterPro
D 38 - 413 Show 3D Structure View in InterPro
2ABR A 38 - 413 Show 3D Structure View in InterPro
B 38 - 413 Show 3D Structure View in InterPro
C 38 - 413 Show 3D Structure View in InterPro
D 38 - 413 Show 3D Structure View in InterPro
2ACI A 38 - 413 Show 3D Structure View in InterPro
B 38 - 413 Show 3D Structure View in InterPro
C 38 - 413 Show 3D Structure View in InterPro
D 38 - 413 Show 3D Structure View in InterPro
×

The parts of the structure corresponding to the Pfam family are highlighted in blue.

Loading Structure Data

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;