!!

Powering down the Pfam website
On October 5th, we will start redirecting the traffic from Pfam (pfam.xfam.org) to InterPro (www.ebi.ac.uk/interpro). The Pfam website will be available at legacy.pfam.xfam.org until January 2023, when it will be decommissioned. You can read more about the sunset period in our blog post.

Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
0  structures 1  species 0  interactions 1  sequence 1  architecture

Protein: AGUA_VIBPA (Q87NU5)

Summary

This is the summary of UniProt entry AGUA_VIBPA (Q87NU5).

Description: Putative agmatine deiminase {ECO:0000255|HAMAP-Rule:MF_01841}
Source organism: Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) (NCBI taxonomy ID 223926)
Length: 360 amino acids
Reference Proteome: ✓

Please note: when we start each new Pfam data release, we take a copy of the UniProt sequence database. This snapshot of UniProt forms the basis of the overview that you see here. It is important to note that, although some UniProt entries may be removed after a Pfam release, these entries will not be removed from Pfam until the next Pfam data release.

Pfam domains

Download the data used to generate the domain graphic in JSON format.

Show or hide the data used to generate the graphic in JSON format.

Source Domain Start End
Pfam PAD_porph 13 359
disorder n/a 168 169
disorder n/a 177 178
disorder n/a 242 247
disorder n/a 279 281
disorder n/a 283 288

Show or hide domain scores.

Sequence information

This is the amino acid sequence of the UniProt sequence database entry with the accession Q87NU5. This sequence is stored in the Pfam database and updated with each new Pfam release, but this means that the sequence we store may differ from that stored by UniProt.

Sequence:
1
MKLSTTPAQD GFYFPAEFQP VSEVWLAWPE RKDNWRDDAL PAQETFARIA
50
51
NLIAEVTKVC VAVCSHNFDR ARQMLHSDVR LVEIPFNDAW MRDIGPTVLV
100
101
NQAGERRGIS WQFNAWGGEY NGLYDNWQQD DLVAGSVCDI IGIDYYRAPF
150
151
VLEGGAIHTD GEGTLYTTEE CLLSPGRNPQ LSKAQIEEQL KVYLGIEKII
200
201
WLPNGLFNDE TDGHVDNLMH VIAPGKVVLS WTDDPSDPQY ALSRQAEQVL
250
251
KSQHDAKGRE IEIVRLPLPG PLHYSEREAN GIDASSGMSR QAGERLSASY
300
301
ANFLIVNGHV FLPMLDEDTD AIAIDILQNA MPEYQIIAIP SREVLLGGGN
350
351
IHCITQQIPA                                            
360
 

Show the unformatted sequence.

Checksums:
CRC64:635478931FDA1ACB
MD5:14e5831f2a3bf4dde06fdd1d93b0f93f

AlphaFold Structure Prediction

The protein structure below has been predicted by DeepMind with AlphaFold. For more information, please visit the AlphaFold page for this protein.

Model confidence scale

  Very High (pLDDT > 90)
  Confident (90 > pLDDT > 70)
  Low (70 > pLDDT > 50)
  Very Low (pLDDT < 50)
Highly accurate protein structure prediction with AlphaFold. John Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A. A. Kohl, Andrew J. Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W. Senior, Koray Kavukcuoglu, Pushmeet Kohli & Demis Hassabis Nature 2021-07-15; DOI: 10.1038/s41586-021-03819-2;